MmuEX6021066 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124793813-124796360:+
Coord C1 exon
chr5:124793813-124793947
Coord A exon
chr5:124794226-124794442
Coord C2 exon
chr5:124796241-124796360
Length
217 bp
Sequences
Splice sites
3' ss Seq
GACAGGCGTTTTGTGACCAGGTG
3' ss Score
5.9
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGAGCAAAAGTATTTAAATGACCTCTTCGAGAAATATGTGCCCACTCTCATCGACATGATCATAGAGGGGATCGTGGACGGGAGGCAAGGGGAGAAGCTGAAGATGGTGGTTCCCCAGACAGACCTAAATATG
Seq A exon
GTGACCCAGTTAACCAGGATGTTGGATTCGCTGCTAGAAGGAGAAATCGAGGATCTTGACCTGCTAGAGTGCTTCTTCCTGGAGGCTCTCTACTGCTCGCTGGGCTCCTCCCTGCTTGAGGAGGGAAGGGTGAAGTTTGATGAGTGTATCAAACGCCTCTCGTCAATGCCCACTGTGGATTCGGAAGGGAACTGGGCCCGTCCCGGGGAACTGCCAG
Seq C2 exon
GGCATCTTCCCTCCCTGTACGACTTTCATTTCGATGCCAAGCGGAACCACTGGATTCCATGGAACAAGCTCGTTCCTGAATACGTGCACAGCCACGAGAAGAAATTTGTCGACATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'38-60,'38-49,49-60=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.041 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(3.7=24.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGCAAAAGTATTTAAATGACCT
R:
AGGATGTCGACAAATTTCTTCTCGT
Band lengths:
253-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types