BtaEX6072227 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54111037-54115938:-
Coord C1 exon
chr17:54115804-54115938
Coord A exon
chr17:54115289-54115505
Coord C2 exon
chr17:54111037-54111156
Length
217 bp
Sequences
Splice sites
3' ss Seq
GGTATTTTCCTATGAACCAGGTA
3' ss Score
4.4
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGGAGCAAGGTTATTTAGAGAGCCTGTTTGAGAAATACGTACCATACCTCATTGATGTGATAGTGGAAGGAATAGTGGATGGAAGACAAGGAGAAAAGCTGAAGACAATAGTTCCGCAGACAGACCTGAATATG
Seq A exon
GTAACCCAGTTAGCCAAGATGCTGGATTCGTTACTAGAGGGAGAAATCGAGGAGCCCGATCTTCTGGAGTGCTACTTCTTAGAGGCTCTGTACTGTTCTCTGGGCTCCTGCCTCCTTGAGGATGGAAGGGCTAAATTTGATGAATGTATTAAGCGCATTGCTTCTTTGCCTACTGCTGATACAGAAGGGATATGGGCCAGTCCTGGGGAACTGCCAG
Seq C2 exon
GTCAGCTTCCAACCTTGTATGACTTTCACTTTGATTCCACACAGAAGAAATGGATACCGTGGAATCAATTAGTTCCAGAGTATGTTCATTCCCGCGAGAGGAAATTTGTTGACATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'43-46,'43-45,44-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(3.4=22.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGCAAGGTTATTTAGAGAGCC
R:
GGATGTCAACAAATTTCCTCTCGC
Band lengths:
252-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]