GgaEX0004148 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4879647-4881513:-
Coord C1 exon
chr15:4881297-4881513
Coord A exon
chr15:4880706-4880825
Coord C2 exon
chr15:4879647-4879792
Length
120 bp
Sequences
Splice sites
3' ss Seq
AGCTGTTTAATGGTTTGCAGGTC
3' ss Score
6.76
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTGGTTCAGCTGACTGTGATGCTGGAAGCTCTGCTTGGGGCACAACCTGATGATCCTGATGTTCTAGAGTGCTTTTTCTTGGAAGCCTTATATTTCTCTTTAGGTGCTTCTCTTCTTGATGCTGGAAGAGTTAAATTTGATAAATACATTAAACATGTTTCCTGTATGTCAACTGTTCATGATGAGAACATCCTGGCTAAGCCAGGGGAGCTGCCAG
Seq A exon
GTCAGCTGCCAACTTTGTATGACTTTCATTTTGATGGATTTCAAAAAAAGTGGGTACCTTGGATGAAACTTGTTCCTGAATATATTCATAATCCTCAAAAGAAGTTTCTTGACATCCTAG
Seq C2 exon
TGCCTACAGTGGATACAACACGCACTACTTGGTTGCTAGAACAGATGGTAAAAATAAAACGCCCAGTTGTTCTTGTAGGTGAATCCGGTACCTCTAAAACAGCAACGACGCAAAACTTCTTAAACAGTCTGAATGAAGACCTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(4.8=31.7)
C2:
PF127752=AAA_7=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCAGCTGACTGTGATGC
R:
AGCAACCAAGTAGTGCGTGTT
Band lengths:
253-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]