HsaEX6069946 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123867903-123871602:+
Coord C1 exon
chr12:123867903-123868119
Coord A exon
chr12:123870366-123870485
Coord C2 exon
chr12:123871457-123871602
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCAACCATGATTTCCTGCAGGTC
3' ss Score
8.33
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTAACCCAGTTAGCCAAGATGTTGGATGCGTTGCTAGAAGGAGAAATAGAAGACCTTGACCTGCTGGAGTGCTACTTCCTGGAGGCTTTGTACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGATGAAATTTGACGAATATATCAAACGCCTTGCTTCTTTGTCTACTGTTGACACAGAAGGAGTTTGGGCCAACCCTGGGGAACTGCCAG
Seq A exon
GTCAACTTCCAACCTTGTATGACTTTCATTTTGATAACAAACGGAATCAATGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCATGCCCCCGAGAGGAAATTCATCAACATCCTGG
Seq C2 exon
TTCACACAGTGGATACCACTCGGACTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTGTTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'58-57,'58-56,59-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(4.8=31.7)
C2:
PF127752=AAA_7=FE(17.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGAGGCTTTGTACTGCT
R:
GTGGCTGTCTTAGAAGTGCCA
Band lengths:
247-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains