DreEX6011116 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27744442-27747265:+
Coord C1 exon
chr5:27744442-27744658
Coord A exon
chr5:27746885-27747004
Coord C2 exon
chr5:27747120-27747265
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGTTTAATTTTGCAGTTT
3' ss Score
8.71
5' ss Seq
TTGGTAAAG
5' ss Score
4.05
Exon sequences
Seq C1 exon
GTGATGCAGTTGACTGTTATGGTGGATTCTTTGCTGGAGAATGAGGATTTTCTTTTTGAGGAGCTGGAGTGTTGTTTCCTAGAGGCTCTCTACTGTTCACTGGGGGCTTCACTCCTCGATAAAGGCAGACAAAAGTTTGATGCTTTTATCAAAAAGCTGTCCTCTCTCAACAGTGTTCATGATGAGAAGGTGCTGGCTGGTCCTGGAGAGATTCCAG
Seq A exon
TTTACTTGCCGACTCTCTATGATTTTCATTTTGATGGAACCCAAAAGAAGTGGGTTCCCTGGAGCTCCATGGTCTCAAAATACATTCACAATCCTGAAATGAAATTCATCGACATCCTTG
Seq C2 exon
TCCCGACAGTAGACACGACTCGTGCTAATTGGCTGCTGGAGCAGATGGTGAAAGTAAAAAGGCCAGTGGTTCTGGTTGGAGAGTCCGGCACCTCTAAAACAGCCACCATACAGAATTTCCTGAGTAATCTCAATACAGACACGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'48-45,'48-44,49-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(1.1=4.1)
A:
PF127752=AAA_7=PU(4.8=31.7)
C2:
PF127752=AAA_7=FE(17.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGGAGTGTTGTTTCCT
R:
TTTAGAGGTGCCGGACTCTCC
Band lengths:
256-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]