MmuEX6021065 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124794226-124798051:+
Coord C1 exon
chr5:124794226-124794442
Coord A exon
chr5:124796241-124796360
Coord C2 exon
chr5:124797906-124798051
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCCTTGTCCCCCCACCGCAGGGC
3' ss Score
10.16
5' ss Seq
TGGGTGTGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
GTGACCCAGTTAACCAGGATGTTGGATTCGCTGCTAGAAGGAGAAATCGAGGATCTTGACCTGCTAGAGTGCTTCTTCCTGGAGGCTCTCTACTGCTCGCTGGGCTCCTCCCTGCTTGAGGAGGGAAGGGTGAAGTTTGATGAGTGTATCAAACGCCTCTCGTCAATGCCCACTGTGGATTCGGAAGGGAACTGGGCCCGTCCCGGGGAACTGCCAG
Seq A exon
GGCATCTTCCCTCCCTGTACGACTTTCATTTCGATGCCAAGCGGAACCACTGGATTCCATGGAACAAGCTCGTTCCTGAATACGTGCACAGCCACGAGAAGAAATTTGTCGACATCCTGG
Seq C2 exon
TTCACACAGTGGATACCACCCGCACCACCTGGATCCTGGAGCAGATGGTTAAAATCAAGCACCCTGTTCTTTTTGTGGGTGAATCCGGCACTTCTAAGACAGCCACTACCCAGAACTTCCTCAAAAACCTGAACGAGGAGACCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'40-62,'40-51,51-62=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.082
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(3.7=24.4)
C2:
PF127752=AAA_7=FE(17.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATGTTGGATTCGCTGCT
R:
AACCATCTGCTCCAGGATCCA
Band lengths:
253-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types