BtaEX6072228 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54109626-54115505:-
Coord C1 exon
chr17:54115289-54115505
Coord A exon
chr17:54111037-54111156
Coord C2 exon
chr17:54109626-54109771
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTGACCACTTTTTATTACAGGTC
3' ss Score
9.04
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTAACCCAGTTAGCCAAGATGCTGGATTCGTTACTAGAGGGAGAAATCGAGGAGCCCGATCTTCTGGAGTGCTACTTCTTAGAGGCTCTGTACTGTTCTCTGGGCTCCTGCCTCCTTGAGGATGGAAGGGCTAAATTTGATGAATGTATTAAGCGCATTGCTTCTTTGCCTACTGCTGATACAGAAGGGATATGGGCCAGTCCTGGGGAACTGCCAG
Seq A exon
GTCAGCTTCCAACCTTGTATGACTTTCACTTTGATTCCACACAGAAGAAATGGATACCGTGGAATCAATTAGTTCCAGAGTATGTTCATTCCCGCGAGAGGAAATTTGTTGACATCCTGG
Seq C2 exon
TTCATACAGTGGATACAACCCGTACTACCTGGACACTGGAGCAAATGGTAAAGATTAGGCAACCTGTTCTTTTGGTTGGTGAATCTGGTACCTCCAAGACAGCCACTACCCACAACTTCCTGAAAAACCTGAATGAAGAGACTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'44-47,'44-46,45-47=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(3.4=22.0)
C2:
PF127752=AAA_7=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTTAGCCAAGATGCTGG
R:
CAGTGTCCAGGTAGTACGGGT
Band lengths:
251-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]