HsaEX6069946 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124352450-124362455:+
Coord C1 exon
chr12:124352450-124352666
Coord A exon
chr12:124354913-124355032
Coord C2 exon
chr12:124362283-124362455
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCAACCATGATTTCCTGCAGGTC
3' ss Score
8.33
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTAACCCAGTTAGCCAAGATGTTGGATGCGTTGCTAGAAGGAGAAATAGAAGACCTTGACCTGCTGGAGTGCTACTTCCTGGAGGCTTTGTACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGATGAAATTTGACGAATATATCAAACGCCTTGCTTCTTTGTCTACTGTTGACACAGAAGGAGTTTGGGCCAACCCTGGGGAACTGCCAG
Seq A exon
GTCAACTTCCAACCTTGTATGACTTTCATTTTGATAACAAACGGAATCAATGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCATGCCCCCGAGAGGAAATTCATCAACATCCTGG
Seq C2 exon
ACGTTTCATGAGAGCATTGTGGCTGTGAGTGGCAAGCTGACATTCTGCACGCTAGCACTTTACAAAAATATTGTGCAAGACCTACCTCCCACTCCGTCAAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCGGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'46-51,'46-47,47-51=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(4.8=31.7)
C2:
PF127752=AAA_7=FE(21.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTGCTACTTCCTGGAGG
R:
TGGGAGGTAGGTCTTGCACAA
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)