MmuINT0050606 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125274596-125276730:+
Coord C1 exon
chr5:125274596-125274812
Coord A exon
chr5:125274813-125276610
Coord C2 exon
chr5:125276611-125276730
Length
1798 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TCCTTGTCCCCCCACCGCAGGGC
3' ss Score
10.16
Exon sequences
Seq C1 exon
GTGACCCAGTTAACCAGGATGTTGGATTCGCTGCTAGAAGGAGAAATCGAGGATCTTGACCTGCTAGAGTGCTTCTTCCTGGAGGCTCTCTACTGCTCGCTGGGCTCCTCCCTGCTTGAGGAGGGAAGGGTGAAGTTTGATGAGTGTATCAAACGCCTCTCGTCAATGCCCACTGTGGATTCGGAAGGGAACTGGGCCCGTCCCGGGGAACTGCCAG
Seq A exon
GTAGGAATTGAGAGCCTCACTCAGGTGCAGAAATGAATGGTCCTTTTCCTTGTTCCTGCCGGTGTGGGTTGGTGGCCTGGGTGACATGACCACTTACTGCTACATTCAGGACTTGAAGTGTGTTGCCCACTCCAGCAGGCCAAACCCCACCCCCAGACACCACTGCTAGAGGAGGCTGCCCCTCTAGCGCCATTTTGGACCCTTATGCTTCAGTTCTGCCTGAGCTCTCCATGTTTAACACACTCCAGGGTTCCTGGTTTTATCTCGGGGCTTCCCCATCTGTCTCATAGACCAGCAGGAAGACATCATATGAAGGGCTTAAGGGGTTTTATACTTATTCACTTTACATCTGCTCGCTGTCTCCCCCACAACCCTTCTCCCTTCCCTCCACCCCTTCTCTGATCCGGTGGGGACCTCCTTGGGTATCCCCCCCACACACACACCCTGGCTCATCAAGTCTGTGAGGCTAGGTGCATCCTCTTCCACTGAGGCCAGACAAGGCAGCCCATCTGGAAGAGCATATCCCATGAACCAGCAAGAGCTTTTGGGACAGCCCCTACTCCAGTTGTTTAGGGCCCACATGAAGACCAAACTGCACATCTGCTACATATGTATGCTGGGGTGGGGTGTAGGTCTAACCTGTATATGTTCTTCGGTTGGTGGTTTCAGACTCAAGAGAGTCCCAAGGGTCCAGGTTAGTTGACTCTGTTAGTCTTCCTGTGGAGTTCTTATCCCCTTCTGGGCCCATTATCCTTCCTCCTATTCTTCCATAAGAGTTCCCCAAGCTCCATCCACTGTTTGGCTGTGGATGTCTGCATCTGTCTGAGTCAGCTGCTAGGTGGAGCCTCTCAGAAGACAGCCACGCAAGGGTCCTGCCTACAAGCATAGCAGAGTAGTATCATTAGTGGTATCAGGGATTGGCGCTTGCTTGTGGGATGGGTCTCAAGTTGGGCCATTCCCTCAGTCTCTGTTCAAAGTCCTTAGTCATCAGGGAAATGCAAATCAAAACAACTCTGAGATTCCATCCTGTACCTCACTTGAGTTTTTGATCTGGCAGCACCTGCTGGCGAGGATGTGGAGCAAGGGGAAACACCCCTCCATTGCTGGTGGGAGTGCCAACTTGTACAACCACTTTGGAAATCAATTTGGTGGTTTCTCAGAAACCAGGAATAGCCCTACCTCAAGAGCCAGCTATACCACTCCTGGGTTTTAAGATTTTGCGTGAAGACACTCACCCTTAGATACAAACATGTGGAGGCCATGAATGGAGAAGTGGTCTGTCCCAGAGATGGGTAGACAAGGCACACATGTGAATGGGGTCCTGTGAGGAAGTGATATGGAGAGTGGGGTGCAGAGGTGGGCGGGGATCCGGCTCTGGAGCTGTCCTTAACATACGGTTCTCCACCTCTTTCCCATCCAGTCTTTGCCAGATGCCCTCTCATAGGTCATAGGTCATACCTGCACTTCTCCAGCCTCAGAGTTCAGCATCTGCATCACAGTTGTCTATTTACTTGCCTCTACCTTCCCTCGTTTGGGCCGCCAGCATCTGTAAGGGTGGGGACATGGCTTTGCACCCCCATGGTTGTGTCCCCAGGGAGGGCTTGGTGGCTGACGGCAAACAGGTAGCACTTGTTCAAAATTCTCAGACTCTGACCCATGCGTCAGATCCTGAGTTCCTGTCTGTCCTGTGAAAGGTGTACCTAGCAAGCGCAGACAGCTCATTCTAGATGTGTCAGAACCGATCTCATCCTCCAGGTCTATGACCAAAGCAACGTGGATCCTTGTCCCCCCACCGCAG
Seq C2 exon
GGCATCTTCCCTCCCTGTACGACTTTCATTTCGATGCCAAGCGGAACCACTGGATTCCATGGAACAAGCTCGTTCCTGAATACGTGCACAGCCACGAGAAGAAATTTGTCGACATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:43
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(3.7=24.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCCAGTTAACCAGGATGT
R:
AGGATGTCGACAAATTTCTTCTCGT
Band lengths:
335-2133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: