DreINT0009124 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27744442-27747265:+
Coord C1 exon
chr5:27744442-27744658
Coord A exon
chr5:27744659-27747119
Coord C2 exon
chr5:27747120-27747265
Length
2461 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TAACCATTTGTCTTTCTCAGTCC
3' ss Score
8.86
Exon sequences
Seq C1 exon
GTGATGCAGTTGACTGTTATGGTGGATTCTTTGCTGGAGAATGAGGATTTTCTTTTTGAGGAGCTGGAGTGTTGTTTCCTAGAGGCTCTCTACTGTTCACTGGGGGCTTCACTCCTCGATAAAGGCAGACAAAAGTTTGATGCTTTTATCAAAAAGCTGTCCTCTCTCAACAGTGTTCATGATGAGAAGGTGCTGGCTGGTCCTGGAGAGATTCCAG
Seq A exon
GTGAGCAGGGTCAATGGCTTTAATGGTAATCAATGGTACTGAAATGCCTGGCAATAGTAGTGAACTAAGAGAATATAAGTAGTTTTCTTGTGGGTCAAACAATGCGGGTCATTGTTTAACTCTATACAAAGGATCAGCCAGTTTTCATAGTTCCAAAACACAAACAAAAACCGGATCTCGTATGGTTCAAGGTTATAGTGAACTAAAGTCACAAAAACAGGTCATTTTTGTGAAAAAAAACTACATATTTTTAAAATGTGTGTGTATATAACATATTTATTTTATCATTTTTTTTATTGTATTTTATATATACACATTTCTATGCACTTTATTTCTGTTAGTTGCCAATTAATTATTTTTTATTTTCATTATTTTTCATTTTCATTTAATCAAAAATTAAAATGACTAAAAAATAAATAGTCTTATGAATAATAAAAATGACAACAAATATAATTTGAAATTATAAAAAAAAAAAACAATTTATCAATCGTTCATTCATTTTCTTTTCGGCGTAGTCCCTTTATTAATCCAGGGTCGTCACAGCGGAATGAACCGCCAACTTATCCAGCACATTAGTACGCAGCGGATACCCTTCCAGCCCTAACCCATCTCTGGAAAACATCCACACACACTCACTCACACTCATACACTACAGACAATTTAGCCTTCCCAATTCACCTGTACCGCATGGGGGAAACCGGAGCACCTAGAGGAAACCCACGCGAACACAGGGAGAACATGCAAACTCCACACAGAAATGCCAACTGACCCAGCCGAGGCTTGAACGAGCGACCTTTTTGCTGTGAGGCTACAGCACTACCTACTGTGCCACTGCGTCACACACACACTACAGGGGCAGTATGAATCCACCAACCGCTTCTGTTTCTTTTACGCTTACCTCTGTGTGGACTGCTTTAGCAGTTAGCCCAGTGGCTTGGCGCATATGTCAGCGGATTTAGGGCCTACTTACACTATGCTATCCAAACCATGCCCAGGCCCGTTTCCCGGATCGTTTGAGAAGTGTGAGTGCGCTGAATCGGGCTCAGTCGCGGTTCACCTGGGCTTTGGCGCGGTACGCTTGTGTGTGAGTGCAAAATGCACCTAAGCTTGAAATTGAAAGCAAGACGTGACTTTTAAGGGACTGTTTCATATGGATTTATTAGTCATTTTTGCCGTTCAATGAATACAAACTGTCGTAGATTATTAAAGACACAAACCCCTCACTGCACGACAGCTGCGTTTTCACCAAACCTACTAATTCCTGCAGCATGAGGACTTTATGACTGTTTATGACTGTCAAAAGTGGCGAATCTGTTTGGCGAAATATTTAAATGTATGTCACTGCATCCTAAACGACTATAACATTATAACTAGAGAAATCTTCACTGTGCTGAGCAATAGCGCTTCTCTACTGAACAGCGCATCATTGATGATGTAAGCGTGCTCAGGCCCAAATGTAATGTGAGTGCGGGCCGTCGAGGGAGACGGGAGGGGGGACAAGCATGCTTTGGCCCGGTTCAAGGCAACTGTACATAGTGTGAGTACGTCCTTAAGATGCAGAGTGCAGTTGACTGTCAATGGGGTTCGAGTCTGGCGAAGAACAGTTCTAGAAAGCAGATAAAACATAAAGTAAAATAAACAAGTAAATAACAGGTTGAGAATGTGGTAAGATCTGAAAACATGGTAAAAATTTGGTGGCTTTTCTTTATTTGGATTGCTTTTAAAAACACTTTTGACTGGGTTTAGGGAAGGGGGTGGGTGCAGGTATTAGTCCTTCAGGTAGTTGGCCATTCATTCAATTGACAGCAGCCTCTGGTTAATTTACACGAGAAGAACAGGAAAAAAATATACCTCCTGCGACATGTTTTGCATGTCTTTGGACTGTGTGGGAAACCGGAACCCCCTGGAGGAAACCCACTCGAACGGAGGGAGAACATGCAAACTCCACACAGAAATGCCATCTGACCCAGTCGAGGCTCGAACCAGCAAGCTTCTTGCTGTGGGGCGACAGCACTACCTACTGCGCCACTGCGTCGCCCACAATAGTTACTTAAAGACAGTAAAATACTGCTAAATAGCAGACAACAAACTTTAAATAAAAATAATTTAAAAACATTATTATTACTGCATAATAGTTACATATTATCCTTATTTTGTTGTTGTTAACAAAAATTCTTATTTTTAAATTTTTAAATTCTATTTAAAATCTTTTGTTTAATTTTGCAGTTTACTTGCCGACTCTCTATGATTTTCATTTTGATGGAACCCAAAAGAAGTGGGTTCCCTGGAGCTCCATGGTCTCAAAATACATTCACAATCCTGAAATGAAATTCATCGACATCCTTGGTAAAGCAGTCCTCTTTTTGCTTTATTTTCTCTGACCTTTTTTTACCTCCTTTGTACTTGTTTAGTTCTTTATCTTTACTGATGAAAGCTCATTTTAACCATTTGTCTTTCTCAG
Seq C2 exon
TCCCGACAGTAGACACGACTCGTGCTAATTGGCTGCTGGAGCAGATGGTGAAAGTAAAAAGGCCAGTGGTTCTGGTTGGAGAGTCCGGCACCTCTAAAACAGCCACCATACAGAATTTCCTGAGTAATCTCAATACAGACACGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(1.1=4.1)
A:
NA
C2:
PF127752=AAA_7=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]