HsaINT0049251 @ hg19
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124354913-124356149:+
Coord C1 exon
chr12:124354913-124355032
Coord A exon
chr12:124355033-124356003
Coord C2 exon
chr12:124356004-124356149
Length
971 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
GTTCCTAATGTCTACTTTAGTTC
3' ss Score
6.39
Exon sequences
Seq C1 exon
GTCAACTTCCAACCTTGTATGACTTTCATTTTGATAACAAACGGAATCAATGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCATGCCCCCGAGAGGAAATTCATCAACATCCTGG
Seq A exon
GTAAGTCAGAGTCAAATCCTTGTTCCTGGGTTTAGGAGTGTGTGATACTCGCTCTAGGAGGAGGCAAAGAAGATCCCATGGCTTCTCTGGTACTCTAAGTCCCACGCAGAGAGCTGGTAGAGAAGAATTGAAGAGGGTGAGCTGTGGGCCCTCCTGGGCATGGAGGGTGGCCGCTTTGGTATTTTTGTCAGCTGCTGGCTCTGAGCATCTTCCGTGGCTCTGCCTCTCAGCTCTTTCCCCAGCAGGCCGATCCCCACAGGCAGATGAGATGCCGTTTCGCCTCCCCTGGCCTTTCCCTGGGCTCTCTTCAGTCCACAGAGCTGGCTGGGTGGGGACTAGACGGCAACGAACGAGGCAGTGTTTTATAAAGGGCGCTGGCTTGAAAAGCTGTGTGCCATGGGCGTTTACCTACTGAACCACACTTAGAATGCACCCCTCTGGCTGTTCAGATAAAATATAGGCTGGCTATTCAGGTAAAATATGGGCTGAATAATTTCACAAAGCATGTGTCTGACTTTGGTCCATTGAGCTTACGGAGTGAGACATCCCTGTTTTCTCGGGAGCCCATCAGGGTTGAAACCTGCCAGTGCAAGAGGGAGCCAGACCCGATGCTGTGGCTTCACTGTCTCTTCGGAGGAAGGTGTTGCTCAGGAAGTTAAATCCCGCAGGGGTCTGAGTGATGTCAGCAACAAAGAAGCTGAGTTTTTGATATCCTGGCATAAGTCAGAATTGCATCTCAAAACCGGCTTGGGCGTTCTAACCCTGGACTGTGGTGATGGTCGCGCCGCTGCAGAACTGTGCCAAAGTCAATCAGTTATACACTTCAATGGGTGAATGTTTCTGAGGTCATGTCTTGGCCTTTGCTCCTGTTTTTTATGGGATTTGTGGGGTTCTAGGACAACTCCATGTTGCCCCCAGTGCTCACCCTATTGGAGTTGCTGAGATGCCCCTGTTCCTAATGTCTACTTTAG
Seq C2 exon
TTCACACAGTGGATACCACTCGGACTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTGTTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-DNAH10:NM_207437:43
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(4.8=31.7)
A:
NA
C2:
PF127752=AAA_7=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAACTTCCAACCTTGTATGACT
R:
CACTCAGATTTTTGAGGAAATTCTGG
Band lengths:
255-1226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)