MmuINT0050607 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125276611-125278421:+
Coord C1 exon
chr5:125276611-125276730
Coord A exon
chr5:125276731-125278275
Coord C2 exon
chr5:125278276-125278421
Length
1545 bp
Sequences
Splice sites
5' ss Seq
TGGGTGTGT
5' ss Score
3.3
3' ss Seq
CAGATTCTTCTGTCTTCCAGTTC
3' ss Score
7.94
Exon sequences
Seq C1 exon
GGCATCTTCCCTCCCTGTACGACTTTCATTTCGATGCCAAGCGGAACCACTGGATTCCATGGAACAAGCTCGTTCCTGAATACGTGCACAGCCACGAGAAGAAATTTGTCGACATCCTGG
Seq A exon
GTGTGTAAGCACTGCTCTCGGTCTTAGCTCCCCCGCGTGAATGAGTGTGAAAGGCTGTGAGAAGATGACTGTGGCCTCATTGGCAACCCAGTGCCAGCCAGGGAATTGGTTGGGAGCAACTAGAGGCCAGCACCATGGGCCACTTGGGATTCTTCTTCGTCCCCTGCCTCTGAGCACCTCTGTGTGGCTGTGCCCTGGGCTTTTCTAGGTAAGCTGATGGTCACGGTGGCCTGTTCTCCACTTTCCTTCGCATTTCCTAGGGCGTTACAGCCACAGAGCTGGCTGGGTCCAGGGAGGGCAGGAGGGAAGCCACAGCATCGGTTCACAAGGGGCGTGAACCTGAGGAGTCCTGTTTTTCTGTGGTTCCATAGTAAGCGTATGCGGTCTGGTACACCGTGCTAAGGTAGCAAGACACCTGCATTTTCTCAGAACCCCTCTGGGATTGAAACTTTTCTACAGGAGAGTGGGTGGGCAGCACCTGGCTGTGCTGAGACGCTGCCTTGAGCAGCGGTTTCCAGGCAATCAGTCCTGCAGGGGCCAGCGGTGGTGTGAGTTGGGTTTTCATTCAGAGTGCAAATCAGTTGGAGTTCCGGGAGCAGGGTGGCTGAAGCTGGGCCAGTTGCCACCATCACTTTGCCAAGGAATTAGTTCATACTTAATTTGATCAGGTAGAAATCACATCTCCACAAACCCATGGAACAGCAAGGAAACCGAGGCTAGGCATTGATTCACATTCACCGTTGCCGCCAGAGCTTGGCTTAAAAACAAAACAAAACAAACACCAGGTGGGGGCACAGTGGTGCACGTCTTCGATCCCGGTACTTGGGAGGTAGAGGCAGGCAGATCTCTGTGAGTTCGAAGCTAGCCTGGTTTACAGAGTGAGTTCCAGGACAGCCAGGACTACACATGGAAACCCTGTCTCGAAAAACCAAAAACAGACCAGGTTGGAGAGATGACTTAGTGGTTCAATTCCCAGCAACCACACGGCAGTTCACAACCATCTGTAAGTCTAGTTCCAGGCAATCTGACTCCTTCCTTCACACAGACATACATGTAGGCAAAACCACTAATGCACATTAAAAATTTGAAAAAAAGAAAAACCCAAAGCAAAATTACGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGGTAAACCTGAGCACAGTTGTGGAAACATGAACACCCTGTCAAAGTGTCTTCCTATACTGCTCTGCGCTTTCTTGCCTTGAGACAGGGCCCCTCACTGAGCCCGAGGCTTGTCCTGGCCCTCCTGACTGGCCAGCAAGCTCTCAGAACCAGCCTGTCTTCACTCTCCCAGATACTAGAGTTAAAGCTACATGCAGCCACACACAGATTTTAATGTAGGTGCTGGGGATTTGAATGCAGGTCCTCATGATTCCAGAGAAAGGCTCTTACCCACCGAACCACCTCTCCAGTCCCAGCTACCTCTTCTTGGATGCATGGGGCTCTGCGTGCACTGCCCAGTGCCCAAGTGCTTGGCATTCCTGTGACACCCAGATTCTTCTGTCTTCCAG
Seq C2 exon
TTCACACAGTGGATACCACCCGCACCACCTGGATCCTGGAGCAGATGGTTAAAATCAAGCACCCTGTTCTTTTTGTGGGTGAATCCGGCACTTCTAAGACAGCCACTACCCAGAACTTCCTCAAAAACCTGAACGAGGAGACCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:44
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.082
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.7=24.4)
A:
NA
C2:
PF127752=AAA_7=FE(17.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTTCCCTCCCTGTACGA
R:
TGGTCTCCTCGTTCAGGTTTT
Band lengths:
263-1808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: