HsaINT0049251 @ hg38
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123870366-123871602:+
Coord C1 exon
chr12:123870366-123870485
Coord A exon
chr12:123870486-123871456
Coord C2 exon
chr12:123871457-123871602
Length
971 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
GTTCCTAATGTCTACTTTAGTTC
3' ss Score
6.39
Exon sequences
Seq C1 exon
GTCAACTTCCAACCTTGTATGACTTTCATTTTGATAACAAACGGAATCAATGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCATGCCCCCGAGAGGAAATTCATCAACATCCTGG
Seq A exon
GTAAGTCAGAGTCAAATCCTTGTTCCTGGGTTTAGGAGTGTGTGATACTCGCTCTAGGAGGAGGCAAAGAAGATCCCATGGCTTCTCTGGTACTCTAAGTCCCACGCAGAGAGCTGGTAGAGAAGAATTGAAGAGGGTGAGCTGTGGGCCCTCCTGGGCATGGAGGGTGGCCGCTTTGGTATTTTTGTCAGCTGCTGGCTCTGAGCATCTTCCGTGGCTCTGCCTCTCAGCTCTTTCCCCAGCAGGCCGATCCCCACAGGCAGATGAGATGCCGTTTCGCCTCCCCTGGCCTTTCCCTGGGCTCTCTTCAGTCCACAGAGCTGGCTGGGTGGGGACTAGACGGCAACGAACGAGGCAGTGTTTTATAAAGGGCGCTGGCTTGAAAAGCTGTGTGCCATGGGCGTTTACCTACTGAACCACACTTAGAATGCACCCCTCTGGCTGTTCAGATAAAATATAGGCTGGCTATTCAGGTAAAATATGGGCTGAATAATTTCACAAAGCATGTGTCTGACTTTGGTCCATTGAGCTTACGGAGTGAGACATCCCTGTTTTCTCGGGAGCCCATCAGGGTTGAAACCTGCCAGTGCAAGAGGGAGCCAGACCCGATGCTGTGGCTTCACTGTCTCTTCGGAGGAAGGTGTTGCTCAGGAAGTTAAATCCCGCAGGGGTCTGAGTGATGTCAGCAACAAAGAAGCTGAGTTTTTGATATCCTGGCATAAGTCAGAATTGCATCTCAAAACCGGCTTGGGCGTTCTAACCCTGGACTGTGGTGATGGTCGCGCCGCTGCAGAACTGTGCCAAAGTCAATCAGTTATACACTTCAATGGGTGAATGTTTCTGAGGTCATGTCTTGGCCTTTGCTCCTGTTTTTTATGGGATTTGTGGGGTTCTAGGACAACTCCATGTTGCCCCCAGTGCTCACCCTATTGGAGTTGCTGAGATGCCCCTGTTCCTAATGTCTACTTTAG
Seq C2 exon
TTCACACAGTGGATACCACTCGGACTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTGTTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653:ENST00000409039:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(4.8=31.7)
A:
NA
C2:
PF127752=AAA_7=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAACTTCCAACCTTGTATGACT
R:
CACTCAGATTTTTGAGGAAATTCTGG
Band lengths:
255-1226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development