GgaINT0008951 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4926309-4927487:-
Coord C1 exon
chr15:4927368-4927487
Coord A exon
chr15:4926455-4927367
Coord C2 exon
chr15:4926309-4926454
Length
913 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CTATTCATGATCTTTTTCAGTGC
3' ss Score
8.07
Exon sequences
Seq C1 exon
GTCAGCTGCCAACTTTGTATGACTTTCATTTTGATGGATTTCAAAAAAAGTGGGTACCTTGGATGAAACTTGTTCCTGAATATATTCATAATCCTCAAAAGAAGTTTCTTGACATCCTAG
Seq A exon
GTGAGTGTAAGATAAAAAAAGTGACAATGTGCTTATACTGTATAATATGTGAGTGGCACTTAACGTGAGGTATCCTCACTGTGTGCTGAAGGTCATCTACTCTTGTTCAGTTTCTTGTGATGACAGAAACCAATTTATTTAATGTTCTTGTCATGGTAGATTAGCAGGAATAGAGTTGATATTTACAGGACTGTGTAATAATGAAATGAGGAAGAACTTTTTTCAGTGCCTGACGCATTTTGAGAGAGTCAGAAGAGCAGAACATTGATTCCTTTTTTTTTTGTGTGTGTGTGCGTACTTGTCCAGAAACTCTGAAAAAATCTCACATCACTGGGTCAAGTGCTCAGTAGATAAAAAATACATTTTTAAGGCCATTATATTGGTTGTTATTTGAAATACTATATAATGATGACAAGTGCTTTTCATAGTTAAGGATAAATTGGTCCAGGTTATTTTATAGTAAGATTGAGCAAGCACAGATTAATTTCACTGACAGAATAGGTAATGGTGTGGTCTATAAAATTGTTCCTGATGGCAAGCTATTCACATAGAACAAAATTCATCTCTTTATGGTTCAGGGAAAATTAAGTCCTGATCCAAATATATCCTGATTACGTCCTTGGAATAAGGATTACATGGAATTTCACCAGTCTGTGGCCCTCCTATGTGGAGAATTAATTTTCTCTCATGTCAGTAGGAGAAAAGAACCCAATGATAAAAATTGAATAGTGGTGGTTAATCAATTAAAGATTTTCTTCAGCCTGGTTAGTAAGTTGATATTTCAGGTTATGTCTTTGTGCAACCGCATGTTAATTCTTTGTGAATCTGATCCAGCTGTGCTCTACAAATATAAATCCCCCTGGCTGCACTGCCTTTTATTTTAACCTGCTGTTCTATTCATGATCTTTTTCAG
Seq C2 exon
TGCCTACAGTGGATACAACACGCACTACTTGGTTGCTAGAACAGATGGTAAAAATAAAACGCCCAGTTGTTCTTGTAGGTGAATCCGGTACCTCTAAAACAGCAACGACGCAAAACTTCTTAAACAGTCTGAATGAAGACCTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(4.8=31.7)
A:
NA
C2:
PF127752=AAA_7=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCTGCCAACTTTGTATGAC
R:
AGGTCTTCATTCAGACTGTTTAAGA
Band lengths:
262-1175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]