BtaINT0050193 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54109626-54111156:-
Coord C1 exon
chr17:54111037-54111156
Coord A exon
chr17:54109772-54111036
Coord C2 exon
chr17:54109626-54109771
Length
1265 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
ATACTTCATACATTCTCTAGTTC
3' ss Score
4.94
Exon sequences
Seq C1 exon
GTCAGCTTCCAACCTTGTATGACTTTCACTTTGATTCCACACAGAAGAAATGGATACCGTGGAATCAATTAGTTCCAGAGTATGTTCATTCCCGCGAGAGGAAATTTGTTGACATCCTGG
Seq A exon
GTATGTGAGAAACGAAGCCTCGGTTTAAGCATATGTGGTTCTCATTCTGTGTGGAAGGGTGGAAAATCCCGTGGTCCCAGTGGAACTCTAAGTCCCACCCGAGTGCTGGTTGGGAGAAACTGAACATGAGCCATGGGTTTTGCCAAGAGGGTGGCACTTTGGATTCCTTTTATGTGCCTCTGGACATCTGAAGATGTCTATACCCCTCAGCTCTTTTGCCTGGCAGGTGGATCCTCCCTGCCAGGGAGGGTGGCAGGGCTTGAGGTGGGTAGGATGCTCCTCTGCTTCTGCTCACCTTGCACAGGCTCCCTTCTGCCCCGTAGAGCTGTCTGGGCATGGGGAGGGACGCAGGAAGAAGGGAAAGAGGAATGACTAAGGCAGCATTTTGTAAGAGATGCTGCCTTGAGAAGTAGTGTACTATGGATATTGTGTATTGAGCTGTATTTAACATGCACACCTCTGGCTATTTGGATACCATGGAGGCTCAAGATATTCCATGAAATGAATATCTGATTTTGGTTGGTATAGAGTTCTTATAGAATGAAGCATACATGTTTTCTCAGGAACCAATCAGAATTTAAAACTGTCAGTGTAGGAGTAGCCAGATTTGACTTGAAGGTTTGATACTCTCTTCAGAGGAAGCTGAAAAAAGTCAAAGTCTGTCGCTAAGTCGTGTCCTACTCTTTGAGACCCCATGGACTGTAGCTCCCATGCTGTTCTGTCCATGGGATTTCCCAGGCCCGAATACTCGAGTGGGCTGCCATTGCCTCCTCCAGGGGATCTTCCTGACCCAGGGATCGAAGCTGCGTCTCCTGGTTGGCAGGTGGATTCATTACAACTGAGCCACCTAGGAAGCCCTCAGAGGAAGTTGTTGGTCAGGAAACAAGTCTTGATAAGTGACTTATGCAGCAGAGAACCTGGGAGTTTTCAATATCCTGAGTATAAGTCAGAATTGGATATTGAAACAGTTGGGTTTTCTACACTCGTATGTGATGATGACACAGCTGTAGAAATGTATCAAACTCCTCAAAATATACACTTAATATTGGAATGAATTTCATGGTCTGTGAATTATACCTCCATAAAGCTATTAGAAACAATCATTAGGGGTAGTGAGCGTCTCCATTTATATGTTTTCAAGGTCACCCCTTGGGTTTTTGCTGATGCTTCTTATGGGATTTGTGGGATCCTGGGAAACTCCAGGCTGCCCAGTGTGCACCTTATTGGTGTTTCTGTGATGCTCTAATACTTCATACATTCTCTAG
Seq C2 exon
TTCATACAGTGGATACAACCCGTACTACCTGGACACTGGAGCAAATGGTAAAGATTAGGCAACCTGTTCTTTTGGTTGGTGAATCTGGTACCTCCAAGACAGCCACTACCCACAACTTCCTGAAAAACCTGAATGAAGAGACTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.4=22.0)
A:
NA
C2:
PF127752=AAA_7=FE(17.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCTTCCAACCTTGTATGACT
R:
AGTCTCTTCATTCAGGTTTTTCAGGA
Band lengths:
263-1528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development