BtaINT0050196 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54098864-54102138:-
Coord C1 exon
chr17:54101878-54102138
Coord A exon
chr17:54099037-54101877
Coord C2 exon
chr17:54098864-54099036
Length
2841 bp
Sequences
Splice sites
5' ss Seq
TCGGTAACT
5' ss Score
6.25
3' ss Seq
CGGGTCTTTTCATTCTGTAGGTG
3' ss Score
9.95
Exon sequences
Seq C1 exon
GTGGATGAATATGGCACACAGCAGCCAATTGCCCTGCTGAAACTGCTCTTGGAAAAAGGCTTCTTGTATGACCGGGGGAAGGAGCTGAACTGTAAAAGCATCCGTGACCTCGGCTTTATTGCTGCGATGGGGAAAGCTGGAGGAGGCCGCAACGAAGTCGATCCAAGATTTACTTCGCTCTTCAGTGTCTTCAACATTCCCTTTCCTTCCGAGGAGTCTTTGCACTTAATTTATTCCTCTATCCTCAAAGGCCACACCTCG
Seq A exon
GTAACTTTTTTTTTTAAACATATACACGAATCTATTCTTTTTCTTTTTCCTTTTATTTTAAAAAAATTTTCTTGACTCATGTATTTTTGACCATGCTGGGTTTTCATCACTGCATGCAGGCTTTCTCTAGTTGCAGTGAGTAGGGTCTTCTATTGTTGAGGAGCATGGGCCCTAGGGTGCATGGGCTTCATCAGCTGCTATGAGGTGTGTGGGATATTCCTGGACCAGAGATCGAACCTATATTCCTTCATTGGCAGGCAGATTCTTTACCATTGGACCACCAGGGAAGTCCTATTCTTTTTTTTCACCTTCAAACTTTTTTTTTTAATTTTATTTTATTTTTAAACTTTACATAATTGTATTAGTTTTGCCAAATATCAAAATGAATCCATCACAGGTATACATGTGCTCCCCATCCTGAACCCTCCTCCCTCCTCCCTCCCCATACCATCCCTCTAGGTCATCCCAGTGCACTAGCCCCAAGCATCCAGTATCGTGCATTGAACCTGGACTGGCATCTCGTTTCATACATGATATTTTACATGTTTCAATGCCATTCTCCCAAATCTTCCCACCCTATCCCTCTCCCACAGAGTCCATAAGACTGTTCCATACATCACCTTCAAACTTTTAACTTTTAGTTTGTATTGGGTTATAGCTGATTAACAATGTTGTGGCAGTTTCAGATGAACAGGAAGGGACTCAGCCATACATATACAGGTATCCCTTCTTCCCCAAACCCTCCTCCCATCCAGGCTGCCATATAACATGGAGTAGAGTTCCATGTGCTATACAACAGGTCCTTGTTGGTTATCCATTTTGAATATAGCAATGTGTACATGACCTAGGGAAGTCCTATTCTTTTTCAAATTCTTCTCCCATTTAGGCTGTGGGTAACTTGACTTAATTAGAAGTCTAAACCGGAGGGCCTGGTTGGTAGAAACTTGGTAATGATGTATGCATTTGGCACAGCAAGCACAAAGCCTAGAGCCCATGGTGCTTTTAGAGGCCCATGAACAGGTTTTAATTTCTCTCAAAATCAGAAGAAAGGAATCAGTCTAATCCAGCCTAGATTATATTCATCTTTATACCAAGTTAATCATAAAATATACAAGCTAATATATTTAATTATAATTAAGTAATAAAAGAATATATAAATGTATATATAAGTAATATATTTTTATGGAGGAAGGGGCCCATGAAGGCATCAGTGCCTAGGGTCCACGGAAATCATGGTGTGGCCCTGAGTTACATAGGCCACCTTGAGTGACAGCAATGAAGCAACTACAGGATGTGGGCTCTGGAGTCAGTACCCATTCTGCTCCTTGGGCAAGTCCCTGGAGCTCTCTCCTATGCCCATCCTCATCCAGAATAGGGAGGTAATGCTGGTACCGGCCTCCCTGATGTTTTGGAAGAATGAAGGGAGAAAGTGCATGTAATGTGTGTGGCAGAGTGCACACACCGATCCTCATTAGATACTAGTTACTGCTGTTATGTCACCATGATTTACATGACCTCTACAGATGGGCTTCCCCGGTGGCTCAGACCCTAAAGAATCAGCCTGCAATCCAGGAGACTCTGGGTCAGGAAGATCCCCTGGAGAAGGGAATGGCAACTCATTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGCCTGGTGGGCTACATTCCATGGGGTCACAAAGAGTCAGACATGACTGAGCGACTAACATTTTCACACTTTACAAATGGAACCCCTTCATTTAAATAATGACCTCTGATCCTGGCATCGCTCTTCTAAAGCAGGCTTGCTCACTCAAAGTCTTGAGGGACCAGGCAAGAAAGATGAAGGTGTGGGAAGGCCAGATGTGATCAGGGAGCACCTGGCATGTTCATGCCCTACCACAAGCCATTCACTTCCAAAACTGTGAGGTCTGTGCAAGTCACATCAGTCTCAGATGGAGGGTTGGTTTGGGGCTTTGGTTTCATATCATGTTGACTTGTCAGTTAATGTGAAAATCTGGGGAAACAAAAGCAGATCAGATAATTAGTTTCTCTGGTCCTTCCTTTTTTTTTCTTACCTCCTCACAAAAAAATTGATGATGGGTTTTCCCTGGTGGTTGGTCCAGTGGTTAAGAATCTGCTGTGCAGGGGACACCGGTTCAATCCCTAGTCTGGGAGGATCCCATATGCTGTGGAGCAGCTAAGCCTGTCAGCCTCAAGTGCTGGGCCTGCGTGCCGGGAGCCTGTGCTCAGCACTGGGGGCGGGGGGTGTGTGTGAGGGGAGCTACTGCAGTGGGAAGCCTGAGCACCGCAGCTCAGTCGCCCCCACTTGCCAAAACTAGGAAAAGCCCCAGTGCAGCAACAAAGACCTAGCACAGCCAATAAGTAAGATAATAAATAAAATATGTTTTAAAAATTATAGAAAAATTCATGCAATGTAAGACTAGCTATTAAAACCATTTTAAAATACACAGTTCAGTGACACTTAGTACTTTCATAATGTTGTACAACTATCACCACTGTCTAGTTCCAGAATATTTTTATCACCCCCAAAACAGTTATTCCATTCTGTCCTTCAGCCCCTGGCAACCACTAATCTGGACTCTGTCTCTATGGATTGTCCTATTCTGGACACTTCCTATCAGTGGAATCATACAATATGTGGTCTTCTGTGTTTGGCTTCTTTCACTCAGCATGATGTCTTCAAGGTTCATCTACATTGTATTCTATGTCAGTGTTTTGCTCCTCTTCCTGGCCAAATCATACTCCATGATAATGGATGGACCACATTTTGCTTACCCCGTTCATCCATTGAGAGACACTTGGTGTGGGGGGGCGGGTCTTTTCATTCTGTAG
Seq C2 exon
GTGTTTCATGAGAGCATCGTGGCTGTGAGTGACAAGCTGACATCCTGCACGTTGACTCTTTACAAAAACATTGTTCAGGATCTGCCGCCCACCCCGTCCAAGTTCCATTACATCTTTAACCTTCGAGATCTCTCACGGGTTTATAACGGTCTTGTCCTCACTAACCCCGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(32.1=100)
A:
NA
C2:
PF127752=AAA_7=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development