GgaINT0008954 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4924223-4925136:-
Coord C1 exon
chr15:4924876-4925136
Coord A exon
chr15:4924396-4924875
Coord C2 exon
chr15:4924223-4924395
Length
480 bp
Sequences
Splice sites
5' ss Seq
GCGGTAATT
5' ss Score
6.84
3' ss Seq
CTTTTTTCTCATGTTTGTAGGAG
3' ss Score
9.31
Exon sequences
Seq C1 exon
GTTGATGAGTATGGCACACAGCAACCCATTGCCTTGTTGAAGTTGCTACTAGAAAAAGGTTTCTTATATGACCGCAGTAAGGAGATGAACTGTAAAATGCTCCGAGATCTGGGTTTTGTTGCTGCCATGGGGAAAGCTGGAGGAGGTCGGAATGAAGTCGACCCTCGATTCATCTCACTCTTCAGTGTTTTTAACATACCTTTTCCTTCTGAGCAATCACTGAATTTGATCTACGCCTCCATCCTGAAAGGCCACACTGCG
Seq A exon
GTAATTTCACTGTTGTTAAAGGATTGCTTAACAGGTTTATTTTGAAATATACATTTATTTTTGTGTTCTTTTAATTGACTGAAGCTAGTTGAATCATTTAGGTGTGGTTCCTATAACCAAATGCACAAAGATCGGAGAGCTCTTTCCCAAATGACAATGAAAAATTCAGTACAATGCAGTAGGCTGCATTATTATACAATTAAACTGGAAAATCAAGAAACAAAAGAGTAGTTTATTTTTTCTCATGTGGAAACACTGTGGAAATTCCAGTAATTGAGTGTGATGTTATTTTCAGTGAAGATGGACTGTACCCAAGAGATTTAACTTCTGTGTGTTCACAGGAATACTGCACAGGAACACGAATTTCTAAAAATGTTTGCTCCAAGTTATTTGAAAAGCTGGAAAGCAGTGTATGTTTGATAGTACTCAATTTTCTGTGGGCAGTTGCATGAAAACATCTCTTTTTTCTCATGTTTGTAG
Seq C2 exon
GAGTTTAATGAGTCTATATCAGCCATCTCTGAGACCATAACAGTATGCACCTTGGAGCTTTATAAAAGGATTGTCTGTGACCTACCCCCTACTCCTTCCAAATTCCATTACATTTTTAACCTGCGAGACCTTTCCAGAGTCTATAATGGACTTATTCTTACAACCCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(31.6=100)
A:
NA
C2:
PF127752=AAA_7=FE(21.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAGTATGGCACACAGCAA
R:
AGGAGTAGGGGGTAGGTCACA
Band lengths:
356-836
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]