DreINT0009127 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27749041-27749702:+
Coord C1 exon
chr5:27749041-27749301
Coord A exon
chr5:27749302-27749529
Coord C2 exon
chr5:27749530-27749702
Length
228 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAA
5' ss Score
2.22
3' ss Seq
ATGTCTATTTTATTTTATAGCCC
3' ss Score
8.93
Exon sequences
Seq C1 exon
GTGGATGAATATGGAACTCAACAACCTATAGCTCTCCTCAAGCTTCTGTTGGACAGGGGTGGCATGTATGACCGAGGAAAAGAACTCAACTATAAACTCATAAAGGACCTGGGCTTCATTGCAGCCATGGGGAAGGCAGGCGGTGGTAGGAATGAAGTGGACCCACGATTCATCTCTCTTTTCAGTGTGTTCAACATCCCCTTCCCTGAGGAGGAATCCCTACATCTCATCTACTCTTCTATTCTAAGAGGACACACCAAG
Seq A exon
GTGCAAGAGATATTTCAGCTTCTTGATTAAAAAATGATGGGATGTGCTGACATGAAGTCAAATATTAAATATAGGTGTCTATTGTAGGGCTGCACTGATGGAATGAGATATTTCTTCATTGCAATTATTTTCTCATGTTGTGTTTATAATTTAGATTTTCGTATAAATATTTATCTTGATTCTATTTTATGATTTTTAAATCAGAATTATGTCTATTTTATTTTATAG
Seq C2 exon
CCCTTTGAGGAGTGCATCCGAAACATCTGTGACAAGCTGACGTTTTGCACTCTGGAGCTGTACAAAACCATAATTAAGGATTTACCGCCAACACCTTCCAAGTTCCACTACATCTTTAACCTGAGAGATCTCTCCAGAGTCTACCATGGCCTGACGCTGACCAACCCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(31.6=100)
A:
NA
C2:
PF127752=AAA_7=FE(21.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATTGCAGCCATGGGGAAG
R:
CAGGCCATGGTAGACTCTGGA
Band lengths:
300-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]