MmuINT0050610 @ mm10
Intron Retention
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124800797-124801885:+
Coord C1 exon
chr5:124800797-124801057
Coord A exon
chr5:124801058-124801712
Coord C2 exon
chr5:124801713-124801885
Length
655 bp
Sequences
Splice sites
5' ss Seq
TCGGTAACA
5' ss Score
5.35
3' ss Seq
TTTTCATTTTTTTCTTTAAGACC
3' ss Score
8.16
Exon sequences
Seq C1 exon
GTGGATGAGTATGGTACCCAGCAGCCCATCGCTTTGCTGAAGCTGTTGCTAGAAAAGGGCTACTTATATGACCGTGGGAAAGAACTCAACTGTAAGAGTATCCGTGATCTGGGCTTCATCGCTGCTATGGGGAAGGCAGGAGGGGGCCGCAACGAGGTGGACCCCAGATTCCTCTCACTGTTCAGCGTCTTCAATGTCCCTTTCCCATCGGAGGAGTCCCTGAACTTGATCTACTACTCCATTCTGAAGGGTCACACCTCG
Seq A exon
GTAACAAGGACGACGTGTGGGTGGGTGGGGTGTGATGGCCTGATTTATTTACTCTAGAGTAGGGTCTGCGCACTTAAGGCTTCAGCCAGGAGGGGAGCAGGAGGAATTTCAAGCCTTGCCTGATGCTGTGTTTAACCACAGATGATGGTCATATCTCACATACCCCAATGTCAGAGGACTGAAACCCATGCAGTCAGAGCAGGTCAGATGGTGAGCTGTGCACACACATAAAAAATGTCAAATTCGTGGAATGGAAGATTCATTATTTTAACCATTTTAGCAGATGCAGTTCAGAGGCATTTTTGGTCCACTCAGTCTTGGCTGACTTCTCACTGTGTACATAGAACTTTTTTTTTTAATCCAAAGGAAACCTGTACCCATTACAAGATCTCATGTATCCCAGGTAGGCCTTGTGTCTCTTCCAGCCCCTGGAAGCCACTCACCTGCCTCCATCTCCATGGCCCCATCTGCCTGTGGTATTCCACATCAGTGGGCGCTGGAGTCTGGCTTTTCTCTCTTAGCACCAAGTTCTCAAGACTCATCTGCCTATAAGTGTTTCATTACCTTTCCTGATCAAATACTATTTGATCATAAAAAACGTACCATATGTTGCCTATCCATTCTCCTGATGGGTCTTTTCATTTTTTTCTTTAAG
Seq C2 exon
ACCTTTAACGAGAGCATCGGCGGCGTGAGCAGGAAGCTGACATTTTGCACATTAACACTTTACAAAAACATCGTTCAAGATCTGCCTCCCACCCCTTCCAAGTTCCATTACATCTTCAACCTCCGAGACCTCTCCAGGGTTTTTAATGGCCTTGTCCTTACTAATCCAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011:ENSMUST00000141137:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(32.0=100)
A:
NA
C2:
PF127752=AAA_7=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTATGGTACCCAGCAGCC
R:
GTGGGAGGCAGATCTTGAACG
Band lengths:
348-1003
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types