BtaINT0050203 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54088872-54090074:-
Coord C1 exon
chr17:54089871-54090074
Coord A exon
chr17:54088953-54089870
Coord C2 exon
chr17:54088872-54088952
Length
918 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
3' ss Seq
TATCTCTCTTTCTTTGCAAGGTC
3' ss Score
8.87
Exon sequences
Seq C1 exon
GCATCGTACCCGCGCTTTTCCCAGACGAGGAAAAGGAGTCTATCCTCAGTCAGATTGGGCCAGAGGCTTTGAAGCAAGGGACAGGCCCGGCCAAGGAGTCCGTGTGGCAGTACTTCGTGAACAAGAGTGCCAACAACCTGCACATCGTCCTGGGCATGTCGCCGGTGGGGGACACCCTGAGGACCCGCTGCAGAAATTTCCCAG
Seq A exon
GTGCCCGGGAGCAGAGCCTGCGAATCCTTTCTTCCCCTTCAGTAGGGCACATGCTTTGGGTGAGGGAGTGACATGCATCCTGAGGTTCCACGGTTCCACCAGCCAAGTGACCCATGACATGGTCATTAGGTTGAAAGTTGAGTCCTGCCATGTAGGATGAGCCTGGAGCCACCACTCAACAATCGCCAACCAGCTCTTGTGTTGCAGATGGATGGCTGGTGCCCTTCTTTTTTTACTTTAAATTTTCAAAAAAGTTTTTATTATTGATTTATTTTGACTGTGCTGTGTCTTTGTGGCAGTGAATGGGTTTCTTTAGTTGTGGTGCAGGAGGGCTTGGTTGCCCCAAGGCATATGGGATCTTAGTTCCCCCACCGGGGATTGAACCCTCGTCCCCTGCATTGGCAGGTGGATTCTTAACCACTGAACCTTCAGGGAAGTCCTGGCTGATGTCTTTCTAACATGAGGAAAAGCTCATAGTCCCAGCCTCGAGGCCCATAATGTACACAATATAGCTCTCTGCTCCCTTCTATTTGGAAAATTCTGGCATCCTCATGGAAGTAGCAGAACCTATCCCTAGAATGTGGGTGGGGGGCAGTTTTGCTCCCCAGGGGACACTTGTCAATGCCTGGAGACATTTTTGGTTGTCACAATTTGGGTGGGGCGGGCTATGTATAATTGGTATCTAGCTGATAGAGACCAGGTGTTGCCAAACCCCCCACAATGCACAGACAGTCCCATCACTGAGGATTATCCAGTCAAATGTCAATAGTGCCGAGGCTGAGAAACGGTTTTTGATCGTTGTTTTTGGACATGTCCATCTCATTCACCAATTTGTTGGGTCCCAAAGACTGTATCCATGTTCCCGTGGGTCTCAGAGTAGCAGAGGGATCATCTCTTTTATCTCTCTTTCTTTGCAAG
Seq C2 exon
GTCTGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCTCAAGCTCTGCATGCAGTTGCGAAGTCATTTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(25.4=100)
A:
NA
C2:
PF127802=AAA_8=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTACCCGCGCTTTTCC
R:
ATGACTTCGCAACTGCATGCA
Band lengths:
278-1196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development