DreINT0009134 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27754880-27755260:+
Coord C1 exon
chr5:27754880-27755083
Coord A exon
chr5:27755084-27755179
Coord C2 exon
chr5:27755180-27755260
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTTATT
5' ss Score
3.49
3' ss Seq
TATGTACTTTTCTGCATCAGGGT
3' ss Score
7.21
Exon sequences
Seq C1 exon
GGATGGTTCCAGCACTGTTTGCTGATGATGAGAAGGAATCAGTCCTAAACCAGCTGCGAGATGAAGCTATGAAATCAGGCTGTGGTCCTTCGAAAGAGAGTATATGGCAATATTTTGTCAACAAAAGTGCCAACAACTTGCATATAGTGCTGGCCATGTCACCTGTAGGAGACACTCTCAGAACACGCTGCAGGAATTTCCCAG
Seq A exon
GTTATTGAGCAATGCATAATAAAAACATTCAGTCTTACTCTAACTTCTTTGATTTCACAGATTCATAAGTTCTCTATATGTACTTTTCTGCATCAG
Seq C2 exon
GGTTGGTTAATAACACAAGCATTGACTGGTTCTCTCCATGGCCTCTTCAGGCTCTATATGCAGTGGCCAAGTCATTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(25.4=100)
A:
NA
C2:
PF127802=AAA_8=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTGGTCCTTCGAAAGAG
R:
CCTGAAGAGGCCATGGAGAGA
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]