HsaINT0049261 @ hg19
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124377780-124379270:+
Coord C1 exon
chr12:124377780-124377983
Coord A exon
chr12:124377984-124379189
Coord C2 exon
chr12:124379190-124379270
Length
1206 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
AATCTCTCTTTCCTTTCAAGGTA
3' ss Score
10.77
Exon sequences
Seq C1 exon
GAATTGTACCTGCGCTTTTTTCTGAAGAGGAGAAAGAGTCTATCCTGAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGGCCGGCCAAGGAGTCTGTGTGGCAGTACTTCGTGAACAAAAGTGCAAATAACCTGCACATTGTCCTGGGCATGTCGCCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAACTTCCCAG
Seq A exon
GTACCCGCGGTGGAGCCTGTGAACCCATTTCCCCTGCTTTGGCAGAGTGTGTGGCTGAGGGTCTGTCCACACCTCTCCAGGTTCCCCCAGCAAAGCAAAACAAGACACGGCCATTAGGTGGAAATGTGGGCTCTGCACTGTAGCTTGGGGCTCACTGCCCCTTCTAGGTGCCAGTGGGCGTGAGTGATGTCCCTCTGACAGGAGGATGTACCCATGCTCCTCCATGCGAGGCCCGCAGTGCATGGACGGTGGCTCCCCGCTTCCTTCCATTTGGGAAAATTCCACCAGCCTCATGCCAGCCTTTAGAGCAGAGGTTCCTAATGGGCGGGGCAGGGGCGGGGGAGGTTGTGTTCTAGGGGACTCTTGGCAATGCCTGGAGACATTTTTGGTCATCACAGCCCCGGGGAGCATGCAGTGTAGTACTGGCATCTAGTGGGTAGAAGCCAGGGATGCTGTGAAGCATCCTACAGTGCACAGCCAGCTGCTGCCACAAAGGATTAGAGCCCAGATGTCAATAGCGCCAAGGGTGAGAAACTCTGCTTTTGATGAACTAGATTTGGACACATCTGGCTCATTCACCAACTTGTTGGCTATTGAAGATGGCATCCATGTTCTTGAGTGTCTCAGGGTTGCAGAATGAGCATCCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAATCTCGCTCTGTCGCCCAGATTAGAGTGCAGTGGCACCATCATAGGTCACTGCAGCCTCGACCTCCTGGGCTCAAATGAGCCTCTCACCTCAGCCTCCCTAGTGGCTGGGACTATAGGCGCACACCACCACGCTGCCTGGCTGATTTTTTTTTTCTTTGAGACAGGGTCTCACTCTGTTGCCCAGACTGGAGTGCAGTGGTGTGATCTTGGCTCACCACAACCTCCACCTCTCGGGTTCAAGCGATTCTCTCACCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGCACCACTACTGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGAGTTTTGCCATGTTGTCCAGGCTGGTCTTGAACTCCTGACCTCAAATGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACACCCGGCCCTGATTTTTGTATTTTTTGTAGAGACAGGGTCTCGCCACATTGCCCAGGCTGGGAGCATCTTTTTAATCTCTCTTTCCTTTCAAG
Seq C2 exon
GTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCGGTCGCAAAGTCCTTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-DNAH10:NM_207437:52
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(25.4=100)
A:
NA
C2:
PF127802=AAA_8=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGGAGAAAGAGTCTATCCTGA
R:
TAGAAAGGACTTTGCGACCGC
Band lengths:
262-1468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)