GgaINT0008960 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4919894-4920952:-
Coord C1 exon
chr15:4920749-4920952
Coord A exon
chr15:4919975-4920748
Coord C2 exon
chr15:4919894-4919974
Length
774 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
CACTATGCTTTTATTTTAAGGTC
3' ss Score
9.16
Exon sequences
Seq C1 exon
GAATGGTGCCAGCCCTTTTTGCAGATGATGAAAAAGACAGCATACTAAGTCAGATTGGAGACGAAGCTATTAAAGCTGGTGTGAACCCGGCTAAACAGAGTGTCTGGCAATATTTTGTAAACAAATGTGCAAGCAATCTTCATATTGTCCTGGGAATGTCCCCAGTTGGGGACAGTCTGAGAACGTGGTGCAGAAATTTCCCAG
Seq A exon
GTATCAATTATATACACTGCTTTGTCCCTTCCCTGTCAAACACAGGTTTCTAGGCAAGACAAAATCTCCAGCAGACTCTCACAGCTAAGACTAAGTGGAGCAGGTTTAATGATTACACGTTTGCATTATTTTTTCCAGTTCACTACCATGTATCAGTGGGTATTATTGACTAACATTTAGCAAATCAGTTCATTTTCCAGCTGAACTGCTAGAAATCAATTAGTCATCCTCACTGAACTGGAAGTATACAGACTGCCTATGTCTATAGCCTCTCCTCTATAGTTTACAGAAGAATGTGTCCTATTAAATCATTATGAAACTAGGATATGGTGGTAAGAGAAACATTTTTATATCCAAGGCTAAAAGAAGAGTGGGTTAAGAAAGACACAGCTAAGAGAAAAACCACCTGGGCCTGGTGTATGCTACTGCAGAACAGGTGGCTGAAAGGTGTCCTAAGAGGACTGAGGATACACACAAATTGAGGTGTACTGGTGGGAATCCCAGTGCAGGCTTTATCTTGACTGCATCCTATGGAATGGTATATAGCCTAAAAAATAAAGCAACAGGTTTAGCAGGACACAGATGCAAAGGTGATTATTTACTATCAGGATGGAAGTACTGGCTTTGTGGTAATTATTGTTCGTGAGTAGGAGCCAAATAAGACCAAACCTGAAAATTCTTGATGCGAACAAAGTTAAGCTTAGGGCAGTCTGGCAGATTAAGATGTAGTTTTACAAAGAAACTTTTCAGGCAACACTATGCTTTTATTTTAAG
Seq C2 exon
GTCTTGTCAACAATACTGGTATTGACTGGTTCTTGCCCTGGCCCCCCCAAGCTCTGTATGCGGTTGCCAAATCCTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(25.4=100)
A:
NA
C2:
PF127802=AAA_8=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGTGCCAGCCCTTTTTG
R:
AGGATTTGGCAACCGCATACA
Band lengths:
279-1053
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]