BtaINT0050204 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54085111-54088952:-
Coord C1 exon
chr17:54088872-54088952
Coord A exon
chr17:54085309-54088871
Coord C2 exon
chr17:54085111-54085308
Length
3563 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TTCCATTCCTTCCTGTTCAGGAA
3' ss Score
9.65
Exon sequences
Seq C1 exon
GTCTGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCTCAAGCTCTGCATGCAGTTGCGAAGTCATTTTTAG
Seq A exon
GTAAGTGGCAGCTAATACCAGGACCACGTTAGCAGTATGCGTGCGTGCTCAGTCGCTAAGTCATATCCGACTCTTTCCGACCCCAGGGAATATAGCCCACCAGGCTCCTCTGTGGGATTCTCCAGGTAAAGATACTATATATTAACAGTATAACAATTTGTCATCCTTTTCCAGACTTTGAATTTTGGTCCAGTAGATTCCACAGTCATAAATGATGTTTGTTAGTGTGTTTTGGTTCATATTGTGTTTTAGTCCAAAGAGACTTCAGGGGTTTTACAGAGATAATGCAGAATAAGAATTGATTAGATATCATAGAAAGTAAGGGTCAGCAAACCATGGTCTGCAGGCCAAATTCAGCCCCTTGCTTGTCTTAGTAAATGAAGTTTTATTGAAACACATAATAAACATAATGTCTATGGCTGCTTTTATGCTACAACCACAAAGTTGAGTAATTGACACAGAGACTGTATGGCCCACACAGCCTAAAAATTTACTATTTGGTTCTTAAAAAAATTTTTTTTTATTGTAGTATAGTTGCTTTACAGTGTGTATTAGTTTCTACTGTAGAGCAAAGTGAATCAGCTATACATATACATATATCTTCTCTTTTTTGGATTTCCTTCCCATTTAGGTCACCACAGAGCACTGAGTAGAGTTCCCTGAGCTATACAGTTGGTTCTCATGGTTGTTTAGAGAAAATGTGTGCTGACCCCAAGGATGTCTGAAAAATCTTTTGGTAAACTGATTACCCATCAGTGTGGAATTTTCAACTCCCTAAGGCCTTGGTTATTAATGGTAATCTTCAGAATAAGAAAGTGTTAGTCACTTAGCTGGTCTGACTCTTCGTGGCCCTGTGCGTTGTAGCCTGCCAGGCTCCTCTGTCCACGTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTCCCTTCTCCAGGGGATCTTTCCGACCCAGGGATCAAACCCACTTTTCCTGCATTGCAGGCAGATTCTTTACCATCTGAACCACCAGGGAAGCCCTTAAGCCAGTCAATTCATCCTTAGGGAAAAACTTTTATATGGACCTAAGTTGAACAGCTTTATGACACTGGGTGACCTTGTGAATAGCTTTAGCCTTATAAATACATATCCAATAAATAACTAGTCCCACTTTACAGACAGATTGCAGTTTTTTGGAGAAGGGGGCTAAAAGAATATGACTCTTTTCTGATGATATAACTCCAAGATCAGCAAACTTTTTCTGTAAATGCTGCTGCTATGAAGTCGCTCGGTTGTGTCCAACTCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCCTCTGTCCCTGGGATTCCCTAGGCAAGAATACCTGGAGAATGACTAGATGATAAATATTTTTGGCATTGTGGGTCATATGGTCTCTGTTGCAACTGCTCAGTTTCACCATTGCATCATGAAAGTGGCCATAGACAATATGTAAGTCAATGGGCATGGCTGTGTGCCAGTAAAACTTTATTTACAAAAATGGGCAGTGGGCCAGATGTCCTGGGGGCTGCAGTTGCCAGCTCTGATATAGATGTGCCTTAGCTTTCATTGGACTTCCCGTGTGGCTCAGACAGTTAAGAATCTGCCTGCAATGCAGGAGACTCAGGTTCGACCCTGGGTCAGGAAGATCCCCTGAAGGAGGGCAGGGCAACCTACTCCAGTATTCTTGCCATGGATAGAGGAGCCTGGCGGGCTACAGTCCATGGGGTTTCATAAAGAGTCGGACACAACTGAGTGACTGACGCTTTCACTGTCTTTTCACTTTGGCTTTCATAGGCTTTTTAGCCATGTCTGTGCATTAGTACTTAGCTGCTTTCAGTATTCAGTGGTTAAGCATCATAAATAATGGTGCATGGAATTTACTTAGAATTTTTCTCTTAGGATATATTCCTGGAATTGGGATGACTGTGCCCAATAAGTATAGATATTTGTGAGGCAAAGCTTTTCATGCATGCTGTAAAATTTGCCCGTGGACTGTGGTTTGTTGACCCCTGGTATAATTCAAGATCAAATATGCAGAATCTGGATGAATGCCTACTTTTGGTCATACTTCCTTCCTTTATTTTTGAGGTGAAAATATTTTGCAATCTGTGAGATAATTCAAGTTGATGTGGTTTTGGTACTGGAAGTGATTATTAAGTTTTCAGCAGACATATAGGAAGGCCTGAGCTCAGATTCTCAGTCATGTCTGACTCTTTGTGATGCCCTAGGCTCCCCTGTCTATGGGATTCTCCTGGAAAGAATACTGGAGTGGGGTGCCATGCCTTCCTCCAAGGAATCTTTCCAACCCGGGGATCATACCTGCATCTCGTATGTCTCTTGCATTGGCAGGTGGGTTCTTTACCACTGGCACCACCTGGGAGACCCCATAGGAAGATCTACCTCGTGCCAAATACGTGTTGGGTGCAGGGAAAATAGCAGGGCACTGGGTAAATTTCTTTCCTGGAATCTCAAGCATCTCTCCCAACACTGTGTTAGCCTTTAGCAAGACAGACCTTCCTATGTAGGGAAAGAACATTGGCTTTCTGTGTTCTTGGAGAAATTGCCAGGGTATCAGTCATTTCAGTTCAGTCACTCAGTCGTGTCCAACTCTTTGCAACCCCATGGACTGCAGCATGCCAGGCCTCCCTATCCATCATCAACTCCTGGAGTTTACCCAAACTCATGTCCATTGAGTCGGTGATGCCATCCAACCATCTCATTCTCTGTTGTCCCCTTCTCCTCCTGCCTTCAATCTTTCCCAGCATCAGGGTCTTTTCCAATGAGATAGTTTTTTGCATCAGGTGGCCAAAGTATTGGAGTTTCAGCTTTAGCATCAGTCCTTCTAATGAATATTCAGGACTGATCTCCTTTAGGATTGACTGGTTTGAAAAACCAGAAAAGCCACTGACAAGTGATAACTGCTTTTCTCTTTTTTGTTAAAGCATTTTTATACTGTATTTTATTGTGGTAAAAAAATATGCAAAATTTGCCATTTTAACTATTTTAAACCATTGTTAAGTGTGCACTGTTATACTTTTTAATACAATGTTGTGCAATTCATATCACCGTCCATCTCCAGAACCTTTTTCATCTTTAAAATGGAAGCTCTGTCCCCATTAAACACTCAGTCCCTGTTCTCCCGCCCCCTGCCCCACCCTCCACCCCGGAGCCTCTAATTTACTTTCTGCCACTAATTTGACAGTTCTAGATGTCTCATGTGTCCTTTTATGGCTGGCTTCTTTTACTTTGCATGTTTTCCAGGTTTATCCATGTTGCTGCACGTATCAGAATTTCCTTCTTTAAGGCTGAGTAATACTCCATTTGTGGACAGGCCGTATTTTGTGTGTCCGCCCATCTGTTGGCAGACACTTCTGGCTGCTGTGACTAGTGCTGCTATGAACACTGACATACAAAAGTCTGCCTGTGTCTGTCTTTCACCTCGTTGGGAATGTGCTTAGGAGCGGAATTGTTGGGTCACATGGGAATTCCGTGTTTAACTCTTTGAGGAACTGCTTGTCTCTTTCTTTACGAACCACCCTTTTCCATTCCTTCCTGTTCAG
Seq C2 exon
GAACTAATCAGATGATCCCGGCAGAAAATATAGAAGATCTGGTAGAACATGTTGTTTTGGTCCACGAATCCGTGGGTGAATTCAGCAAACAATTCCTACAGAAACTGAGGCGCTGCAACTATGTGACTCCGAAGAACTACCTGGATTTTATTAACACGTATTCAAAATTACTGGATGAGAAAACTCAGTATAATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(10.1=100)
A:
NA
C2:
PF127802=AAA_8=PD(21.3=85.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development