MmuINT0050618 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125289584-125292016:+
Coord C1 exon
chr5:125289584-125289664
Coord A exon
chr5:125289665-125291818
Coord C2 exon
chr5:125291819-125292016
Length
2154 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
CTCTGTGCCTTCCACTGCAGGCG
3' ss Score
10.33
Exon sequences
Seq C1 exon
GCCTAGTGAACAACACCGGCATTGATTGGTTCATGCCCTGGCCACCTCAGGCCTTGCATGCAGTGGCCAAGTCGTTTTTAG
Seq A exon
GTAAGCCACCACTGTTGTAGGGATTGCTTAGCGGTCTCCTAAAGAAGATTGTCACTGTTCTGACCAAATCTTGGCCCAGTAGGTTGGTTCACCATAGATACCCTATGATAAGGAATAGCTTTGTATTGTAGGCATAGGGCTTGAGGTTATATTTCACTCTAATCCAAAGGCATCAGAAGTTTTCACATTTGGCCTGCTGCCAAATGTGCCCCCCCCCCGATTGTTTTGATGATTAAAGTTTTATTGGCCCACACTTCATGAACATTTTGTCTTCAGCCCTTCCTATACTACATCCTTGCCGGAGAGACAGTGCTGTTACTGTTTATCTCTTTGTAGAGGAAATGTCCCAAAGGTCGCCACCATGGAGATGCCAACACAGGTTCTCTTTTTGTCAAGATCTAACTCGAAAAGGTTTATGACCAATGCCACTGGGTAGCTTTGTAAATAGTTTCAACCTTACCAATATGCACCCAACAAACTCAATAAACAAACAACCCTTCTACCCAAAGCCAAAGCTGTAATTTCAGTTATAATGCTGTTCTCCTGGGAAGGAAACCAAGAGGACATTTGTTGTGACATTATGACTCAGAGTCTGGCTAACTGCTTCTGTGAAGGTCCACATGGCAATATTTGCTTCTGTCACAGCTGCAAAATTCTGACAATGTGCTTTGAGAGCTCTCCAGGACCAGATGTAGATGAATTTGGCTGTGTTTCAATAAAACTTTATTTAGAAAACACAAGTGGTGGGCCGGCCATGCTTGCCCTGTGGAGCTGTGACTGCCAGCCCTGATGTGGCTGTGCATGCTAGCTCCCAAGGTGTGCAAGTCATGTCGCTACCTTCCAGCTTGTGGTGTTTCAGTTCTATGCACAAAGCTGCCCACAATTCACTAACAGTTCTTTCTTTAAACATATTCCCTTAAGCTGAGGTGGCCACGTGGCAAAATTGGATGCCTGTGGGCCGAGTTTTTCAGGCATGCTGTGTGTAGTCTGAGTCACAGAAAGATGCAGAACCTGGAACAGCTCCTTCCCTCATGTTCTCCCCCAAGCCTGTTGCAAACCAGGCTGTCAGTATGACCCAAGTAGAGAGATTTGTCTCTGAGAAAGATCACCAGTCATTCTAGTAGTCTCCCTTCCACCACTGTGTGCTGGACACTGGGCTCTGTCACAGAGTGGCTGAGTCCACCTATCCAGCTGCCGAGGGTCTGCTATGACTTTGTGCTGGGCTAGGGGATCAGTCAGGGTTGATTGTGGGTCCCAGTCCTGAAGGTCCAGCTTCTCCTGATGGTGCCTGAGTGCTGGGGAAAGGCAGAGAACTCCCTGGCCCAGGGCAGAAGGGTTGGCTTCTGTGTTAGAGAAATCACCAGGGACAGAGCACAGGTTCCAGAAGTTGCCACAAATAATAGCCGCTCACTTCCTTTTTTCAAATTAAGTTTTTGGTGAAATCACTTTTTGCTTAAGGAAAATATGTCTACTGTAAACTTTCCCTTTCTGTCCATCTTAAAAGTACTCGAAGCACCGATTACATTCAGAATGTTAGGTAATCATTACCTCCATCTGTTTCTAGAACTTTCCATTCTCCTCAACTGAAGCTCTGTACCCATCTAGACACTGACTCTTCCCTCCCCCAGACCCTGGATACCTCTAACCTGCTTCTTGTCTCTCTGAAACTTCCCTGTGTCTATGTATCTCATGTAAGGGGACCCATGCACATTGTATCTTTGTGCCTAGCTTCTTCTTTTTGTAAAGTGTTTCTGGGGGCTCACTTAGAATGTAGCTCCACATTTGATCCTTTTTTTGTGGCTGAATAGTACTCCACTGTATGGGCATGCCACACTGTTACTGCTCACCTCAGATAGACTCTGGTCTTTTCTCCTGACCACTCTGCTGCTGTAAACATTGGAGATCACAGGCCTTTTGGAGGCTCTATGTCTGGTTCTTCCCGCCACACTTCTGAGGGTGGAATTCTTGAGTTTGTGGGTCAGTATTTCACTTTCTGGGGACTTGTTCTTTTTTTTTGTTTGTTTGTTTTCTGCAATGCTGGGGACCCGATGCCAGAGCCTCATATGCTAGGCTGGTGCTTGCCACTGAGCTGCCCCCCCAGTCCTCCTTTTCCCTGTTTCTAACCCCCCACTTTCTCTGTGCCTTCCACTGCAG
Seq C2 exon
GCGATAACTCCATGATTCCCGATGAGAAACTTGAGGAGCTTGTGGAGCACGTGGTCATGGTCCACCAGTCGGTGGGCGAGTTCAGCAAGCAGTTCCAGCAGAAGCTGAGGCGGAGCAACTATGTGACGCCCAAGAACTACCTAGACTTCATTAATACCTACTCAAAACTACTAGATGAGAAAACCCAGTACAACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:54
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(10.1=100)
A:
NA
C2:
PF127802=AAA_8=PD(21.3=85.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: