DreINT0009135 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27755180-27755558:+
Coord C1 exon
chr5:27755180-27755260
Coord A exon
chr5:27755261-27755360
Coord C2 exon
chr5:27755361-27755558
Length
100 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TGTGTCATGTCAAATTTCAGGTG
3' ss Score
8.95
Exon sequences
Seq C1 exon
GGTTGGTTAATAACACAAGCATTGACTGGTTCTCTCCATGGCCTCTTCAGGCTCTATATGCAGTGGCCAAGTCATTCTTAG
Seq A exon
GTGAGTTTTAATGCGCTTTTTAGATATGATTATTATTGATCACTAATCCTGTGCATTGTGCAAGCTCATTAATGAAATGTTGTGTCATGTCAAATTTCAG
Seq C2 exon
GTGAGAGTCCGATGATCCCAAAGAGCCATTCTGAGGCAGTGATTGATCACGTGTGCATGGTACACAGCTCGGTAGGCGACTATAGTAAACTGTTCCTGCAAACTCTACGTCGTAGCAACTACGTCACCCCTAAAAACTACCTGGACTTCATTAACACCTACTCCAACCTACTGGAGGACAAAGATAAATACATACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(10.1=100)
A:
NA
C2:
PF127802=AAA_8=PD(21.3=85.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGTTCTCTCCATGGCCT
R:
TCTTTGTCCTCCAGTAGGTTGGA
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]