GgaINT0008961 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4919293-4919974:-
Coord C1 exon
chr15:4919894-4919974
Coord A exon
chr15:4919491-4919893
Coord C2 exon
chr15:4919293-4919490
Length
403 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TTTATTCTGACCAATTTTAGGAA
3' ss Score
8.93
Exon sequences
Seq C1 exon
GTCTTGTCAACAATACTGGTATTGACTGGTTCTTGCCCTGGCCCCCCCAAGCTCTGTATGCGGTTGCCAAATCCTTTGTTG
Seq A exon
GTAAGTAAGATATCAATATTTTAACCCACTAATCCTCGGTTTGGCCTAAGAAATATATTCTTTGCTTTGACTTTATTGTAGATTTCATCTCACTTTCCTGTTGTGGGTGCTACCATAGATCTACAAGGATGATGCAGTATCCCAGTAAAAAAAATGGTTTTGTTTGTCAGTGTCTTACTCAAATAGGTTTAATAGAAATGGCTAAGATTCAAGCCCGTAACTCTGGAGATGATGTGACCTGGCTATCAGGATGCCTTTGTACTCTTCTGAGCTCTATCTTGGCCTTGTTTTTTGTCCCAGGAAGCAGATTCTGTGCCTGGCTTAAGTAGACATTAAATAAAGAAGATGGTAATTGACATACCCTTTAAAAAAATATTTATTTATTTATTCTGACCAATTTTAG
Seq C2 exon
GAAGTAACACACGCATTCCAGCAGAGAGCTCCAAGATGGTGGTTGAGCACATGGTTGTGGTGCATGAATCTGTAGAGATTTTCAGCAAGAGGTTTCTGCAGAAATTAAGGCGTAGTAACCATGTCACGCCAAAGAATTACCTTGATTTTATCCATATGTATTCAAAATTGCTTGAGGAGAAAAATGAGTTCATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(10.1=100)
A:
NA
C2:
PF127802=AAA_8=PD(21.3=85.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGTATTGACTGGTTCTTGCC
R:
AATGAACTCATTTTTCTCCTCAAGCA
Band lengths:
262-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]