BtaINT0050210 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54174620-54176952:-
Coord C1 exon
chr17:54176736-54176952
Coord A exon
chr17:54174778-54176735
Coord C2 exon
chr17:54174620-54174777
Length
1958 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GTCCATTTTTATTCTGCTAGGTG
3' ss Score
7.88
Exon sequences
Seq C1 exon
GTTTTTTTGCCAGCCTTGTCCTTCAGTCAGCACAAGGATGCCAACCTGGGACTCACGTCTGGAGAAGTCTTAGACTCTTTTGATTATGACATAGACCTACCTAGCATGCCTGGGGAAGCAATAGAATATCACAGCATTCAGTTAATACGAGATGAATTTTTAATGAACATCCAGAAATTTGCAAGTAGTATTCAAAGAACAATGCAGCAACTTGAAG
Seq A exon
GTAAGGCTTTAGTTTTTCTCCTTGGTTAAGCAGGATGTTTCCATTAAGAAGAATTTAGTTTTGGACACAGTGGGGGATGGAGAGGTGGGATGATCTGAGAGAATATCATTGACACATATACATGACCATATGTAAAATAGAAAGCCAGTGGGAGTTTGATTTATGATGCAAGGAACCCCAAACTTGTGCTCTGTGACAACCTAGAGGTGTGGGATGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCATTGGTAGGTGGAATTGAGGAGCAAGGGCATTTCAGTCAGGGAGAATGTGGACCTTGTGAGGTTCATTTTGCATTCATGTTGCTAAGCACTGTATGAGATTCAGTGTGCTAAGCACTCTGTATTTTCAGTCTGAAGATCTAGCCTTTTAGTATGAAAAACTCTCTTGATAATTTCCTCCACTATTTGTCTGTTTCCTTTTGCTAATATTCCTGTTGGGTGTGTGCTGCTGATTCTGTTACTTATCTTTTCACTTGTGTTTTCCGTCTCTGTGTAGAATACACAGACAAAGAGATCCTAAAGAGTGCCTAAAGAGTTCCTCAACTTTTACCTTCACAACTTTTGATTAGACTTTCACTTATTCTGTGACTGTACCTTTTCCATAGCATTCTGTTCTTGTTTGATGGATGCTATATTGTCTCAAATCTCTAATAGTTGGAATTAAGACTGCCCCCCCCGCCTCATCTTTTCTTTTATCTCAATGTCCTCTGAAGTCATTGTTGCTGACTTATCTTGGATTGTCTGTTTCATGCTGGAGACGTTCTCGAATATGTATTGCGATCTGGTTGTTTGTTCAGTTTTTAAATTGACATTAGGTTGTAAACTCAGGAATTCTTATTAATAAGTAGCTAAATCATTTTGACGGCACTTGATGCTGCTACGGTGATCTAATTATCTAAAATGTTTTAGGGACTTCCCTGGTGGTCCAGTGGTTAAAAATCTTCCTTCCAATGGAGGGGATGAAGGTTTGATCCCTGGTTGGGGAAATAAGATCCCACATGCCAGGCGGGGGCGGCAACTAAGCTTGCATGCTGCGACTATGTAGCCTACGCCCTAAAGCCTGTGCACCACAAGGAAGATTCCACGTGCTGCAACCGGAAGACCTGATGCAGCCAAATAAATAAATAAAACGTTTTAGTACGTTTAGTGAAAGAGATTTTTAAGAGAGGATATATAGGAATATGAGGATCGTGATGTACCACTATATACTCATGTGTGGAGAGGAGATCCAGAATTACCTTGAAGGTTATTGTCTGTAACCATTTCCTCCAAACTCCTGACTGACTGTCCATTTTTATTCTGCTAG
Seq C2 exon
GTGAGATCAAGTTAGAAATGCCAAGCATCAGCGTAGAGGGAGAGGTATCTGATCTGGCAGCTGACCCAGAAACAGTTGAAATTTTGGAGCAATGCGTGATAAACTGGTTGAATCAGATATCTACAGCCCTTGAGGGCCAGATGAAAAAGACACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.113
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(10.3=58.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTCAGCACAAGGATGCC
R:
TGGTGTCTTTTTCATCTGGCCC
Band lengths:
351-2309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development