GgaINT1011475 @ galGal4
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4902644-4903640:-
Coord C1 exon
chr15:4903505-4903640
Coord A exon
chr15:4902802-4903504
Coord C2 exon
chr15:4902644-4902801
Length
703 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
AGTGCCATTGCTCCTGACAGAAG
3' ss Score
4.14
Exon sequences
Seq C1 exon
CAACAGGCTGTGGAAGTTTCCTTTGCAGAAAAGGAAGTGCAACCTGTGGGGTACCATAATACTCAGATAAGGAATGATGGTGTGAACATGCAGAAATTCTTAGGCACTTCTCATCTGACTCCACAGCAAACTGAAG
Seq A exon
GCAAGTATTTTATCTATGCTAGTGCTGTGTTGTTCAGACTGGAAGACAATAAAAATAGGTTTGCCTAGGGAATGGCTTTGCTTGGAATAACAAATACATACAGTTTCTGGGGAAGCTGCGGATCTGACCAAAGTTTCTCTTGCTGGTAATGGTAGTATTTGACTGCTCTGAAGCATAGCAGTCAGTATGGAGAAATGGACTAATTCCGTGACATTCTTTCAGTCTGGAGTAAGAACTGGAGGGAAAGTCAACATGCCCTGTTTCTTCCCACTGTTCAGAAGACTCTGGCCATTGCTGGATATAGAAAGCAGTAGACCAAATCAGGCTTTCATGTGTGGTTTAGCATCTCTTCTCTGACATGGGTTAGTTTAGCTACCATTGAGGAAAATTTAATGGTGTGTACTGGGATGACTGATAATGTTCTTCAGCAAGGTCCTTATTCTAATTCTTAATAGTTAGTGATTGGGTTGAGGCTTGAAAGCTGAGAGCTTTTCAGTTATTTCTATGAATATATCTTAGTATTGTGTTAACTAATAGAGCAACTGATGCCTTTTGCCATATTGTCAAACAGGCAGAGAGCAGGTGGTAAGCTGCCTATACTCTAGTAGCTAATAAAATGGAAGGCATAAGCCATTTAGTGATGTTACTTTAATGGTGCTGGTGGAACAAGACAGTTAATTTTAAGTGCCATTGCTCCTGACAG
Seq C2 exon
AAGAGATTAAACTGGACATGCCAACTGTAAATCTAGATGGAGAAGTGAGTGTTCTCGCTACAGTTCCAGAAGTGGTTGAAGCTCTTGAAAGTTGTGCAATGACCTGGCAAAAATTAATATCCACAGTTCTAGAGGAACAACTGAAAAAGGTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.132
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(9.8=56.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGGCTGTGGAAGTTTC
R:
CTGTGGAACCTTTTTCAGTTGTTCC
Band lengths:
294-997
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]