GgaEX1020157 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4901702-4903640:-
Coord C1 exon
chr15:4903505-4903640
Coord A exon
chr15:4902644-4902801
Coord C2 exon
chr15:4901702-4901932
Length
158 bp
Sequences
Splice sites
3' ss Seq
AGTGCCATTGCTCCTGACAGAAG
3' ss Score
4.14
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CAACAGGCTGTGGAAGTTTCCTTTGCAGAAAAGGAAGTGCAACCTGTGGGGTACCATAATACTCAGATAAGGAATGATGGTGTGAACATGCAGAAATTCTTAGGCACTTCTCATCTGACTCCACAGCAAACTGAAG
Seq A exon
AAGAGATTAAACTGGACATGCCAACTGTAAATCTAGATGGAGAAGTGAGTGTTCTCGCTACAGTTCCAGAAGTGGTTGAAGCTCTTGAAAGTTGTGCAATGACCTGGCAAAAATTAATATCCACAGTTCTAGAGGAACAACTGAAAAAGGTTCCACAG
Seq C2 exon
GGTAATGGTCCACTTGCAGAAATTGACCTCTGGCGTGTAAGAAATGCTGTTTTAAGTGACCTTAATGAACAGACAAAGCTTCCAGAAGTGGAAAAAGTCTTGACAATACTACAGGAAGCTGAGTCTGAGTGTGTCACAGATTTACATATAGTCTTCAGTGACCTCAGGGAACGCTGTGTGGAAGCTCTTGATAATGTTAGATTTCTTTCAACTCTGGAACACCATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_CASSETTE13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.132 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083857=DHC_N1=PU(9.8=56.6)
C2:
PF083857=DHC_N1=FE(24.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGAAGTGCAACCTGTGGG
R:
TGTGACACACTCAGACTCAGC
Band lengths:
245-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]