GgaEX0004132 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4901308-4902801:-
Coord C1 exon
chr15:4902644-4902801
Coord A exon
chr15:4901702-4901932
Coord C2 exon
chr15:4901308-4901498
Length
231 bp
Sequences
Splice sites
3' ss Seq
TTACTCCACCTAACTTGTAGGGT
3' ss Score
7.56
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AAGAGATTAAACTGGACATGCCAACTGTAAATCTAGATGGAGAAGTGAGTGTTCTCGCTACAGTTCCAGAAGTGGTTGAAGCTCTTGAAAGTTGTGCAATGACCTGGCAAAAATTAATATCCACAGTTCTAGAGGAACAACTGAAAAAGGTTCCACAG
Seq A exon
GGTAATGGTCCACTTGCAGAAATTGACCTCTGGCGTGTAAGAAATGCTGTTTTAAGTGACCTTAATGAACAGACAAAGCTTCCAGAAGTGGAAAAAGTCTTGACAATACTACAGGAAGCTGAGTCTGAGTGTGTCACAGATTTACATATAGTCTTCAGTGACCTCAGGGAACGCTGTGTGGAAGCTCTTGATAATGTTAGATTTCTTTCAACTCTGGAACACCATTTGAAG
Seq C2 exon
AATTTAACACATGGCACGGGGTTTCATGTTGTCTTGGATACAATTCCTTCACTGATGAATGCCTTAAGAATGGTATGGATTATCTCACGGCATTACAACACAGACGAAAGGATGGCACCCCTCATGGAAAGAATTGCTTGGGAAATTTCAAATCGAGTGTGCAAAGTTGTGGATTTGCATACACTATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'6-14,'6-12,7-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(9.8=56.6)
A:
PF083857=DHC_N1=FE(24.8=100)
C2:
PF083857=DHC_N1=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGTTCTCGCTACAGTTCC
R:
TGCAAATCCACAACTTTGCACA
Band lengths:
292-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]