GgaEX0004132 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4948692-4950192:-
Coord C1 exon
chr15:4950028-4950192
Coord A exon
chr15:4949086-4949316
Coord C2 exon
chr15:4948692-4948882
Length
231 bp
Sequences
Splice sites
3' ss Seq
TTACTCCACCTAACTTGTAGGGT
3' ss Score
7.56
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTGACAGAAGAGATTAAACTGGACATGCCAACTGTAAATCTAGATGGAGAAGTGAGTGTTCTCGCTACAGTTCCAGAAGTGGTTGAAGCTCTTGAAAGTTGTGCAATGACCTGGCAAAAATTAATATCCACAGTTCTAGAGGAACAACTGAAAAAGGTTCCACAG
Seq A exon
GGTAATGGTCCACTTGCAGAAATTGACCTCTGGCGTGTAAGAAATGCTGTTTTAAGTGACCTTAATGAACAGACAAAGCTTCCAGAAGTGGAAAAAGTCTTGACAATACTACAGGAAGCTGAGTCTGAGTGTGTCACAGATTTACATATAGTCTTCAGTGACCTCAGGGAACGCTGTGTGGAAGCTCTTGATAATGTTAGATTTCTTTCAACTCTGGAACACCATTTGAAG
Seq C2 exon
AATTTAACACATGGCACGGGGTTTCATGTTGTCTTGGATACAATTCCTTCACTGATGAATGCCTTAAGAATGGTATGGATTATCTCACGGCATTACAACACAGACGAAAGGATGGCACCCCTCATGGAAAGAATTGCTTGGGAAATTTCAAATCGAGTGTGCAAAGTTGTGGATTTGCATACACTATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'1-1,'1-0,2-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(5.2=54.5)
A:
PF083857=DHC_N1=FE(13.3=100)
C2:
PF083857=DHC_N1=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGTTCTCGCTACAGTTCC
R:
TGCAAATCCACAACTTTGCACA
Band lengths:
292-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]