BtaEX6072197 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54168712-54174777:-
Coord C1 exon
chr17:54174620-54174777
Coord A exon
chr17:54172726-54172956
Coord C2 exon
chr17:54168712-54168902
Length
231 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTGTGCTCATCACAGGGT
3' ss Score
7.17
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGAGATCAAGTTAGAAATGCCAAGCATCAGCGTAGAGGGAGAGGTATCTGATCTGGCAGCTGACCCAGAAACAGTTGAAATTTTGGAGCAATGCGTGATAAACTGGTTGAATCAGATATCTACAGCCCTTGAGGGCCAGATGAAAAAGACACCACAG
Seq A exon
GGTAATGGTCCTCTGGCTGAGATTGAATTCTGGCGGGAAAGAAATGCCACCCTAAGTGCTCTGCATGAACAAACAAAGCTTCCAATAGTCAGAAAAGTCTTGGATGTGATGAAGGAGTCAGATTCATTGCTTGTGGCCAACTTGCAGCCCGTCTTAACTGAATTGTTCAAGTTCCACATGGAGGCCTCAGACAACGTGAGGTTTCTTTCCACAGTGGAACGTCATTTCAAG
Seq C2 exon
AACATCACGCACGGATCTAGCTTTCACGTTGTCTTGGAAACAATCCCCTCCATGATGAGCGCCCTGAGGATGGTGTGGATTATCTCCCGCCACTACAACAAAGACGAGAGGATGATTCCGCTCATGGAGCGCATTGCCTGGGAGATCGCCGAGAGAGTCTGCAAGGTGGTGAATCTGCGGACGTTGTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(10.3=58.5)
A:
PF083857=DHC_N1=FE(25.2=100)
C2:
PF083857=DHC_N1=FE(20.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGCGTAGAGGGAGAGGT
R:
TCACCACCTTGCAGACTCTCT
Band lengths:
305-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]