HsaEX6069979 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123783107-123785936:+
Coord C1 exon
chr12:123783107-123783264
Coord A exon
chr12:123783947-123784177
Coord C2 exon
chr12:123785746-123785936
Length
231 bp
Sequences
Splice sites
3' ss Seq
GTGTTCATTTCACCTCTCAGGGT
3' ss Score
9.4
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GTGAGATCAAGTTAGAAATGCCAATCATCAGTGTGGAGGGAGAGGTGTCTGACCTGGCAGCTGACCCGGAAACCGTTGACATCTTGGAGCAGTGTGTGATAAACTGGCTGAATCAGATATCCACAGCGGTTGAGGCCCAACTGAAGAAGACACCTCAG
Seq A exon
GGTAAAGGCCCTCTGGCTGAAATTGAATTCTGGAGGGAAAGAAATGCAACCTTAAGTGCGCTGCATGAACAAACAAAGCTTCCAATAGTCAGAAAAGTCTTGGATGTGATCAAGGAATCCGACTCCATGCTTGTGGCTAATCTGCAGCCAGTGTTCACCGAGTTATTCAAGTTCCACACGGAGGCCTCAGACAATGTGCGCTTTCTCTCCACCGTGGAGCGTTATTTCAAG
Seq C2 exon
AACATAACGCACGGGTCTGGCTTCCACGTGGTCCTGGACACCATCCCCGCCATGATGAGTGCCCTGCGGATGGTGTGGATCATCTCCCGACACTACAACAAAGACGAGAGGATGATTCCGCTCATGGAGCGCATCGCCTGGGAAATCGCTGAGAGAGTCTGCCGAGTGGTCAACCTGCGGACTTTGTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(10.2=58.5)
A:
PF083857=DHC_N1=FE(25.0=100)
C2:
PF083857=DHC_N1=FE(20.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAATCATCAGTGTGGAGGG
R:
CTCTCTCAGCGATTTCCCAGG
Band lengths:
296-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains