MmuEX6021100 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124734447-124742078:+
Coord C1 exon
chr5:124734447-124734604
Coord A exon
chr5:124736803-124737033
Coord C2 exon
chr5:124741888-124742078
Length
231 bp
Sequences
Splice sites
3' ss Seq
TGCGCTCATGTCTCTCTTAGGGC
3' ss Score
10.1
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTGAGATCAAACTGGAGATGCCCAGCATCAGTGTGGAGGGAGACATGTCAGAGCTGGTGTCCAATCCAGAACTGGTGGAGAATTTGGAGCAGTGCGTGATCCACTGGCTGGGCCAGATTTCATATGCGCTGGATTCCCAGATGAAGAAGAAGCCCCAG
Seq A exon
GGCAATGGCCCTCTGGCTGAAATCGAATTCTGGAGAGAGAGAAATGCAACGCTGAGCGCCCTCTACGAGCAGACGAAGCTTCCATTTGTTAGGAAGGTCTTAGAGGTGATCAAAGAAGCAGAGTCCATGCTCACGGCCAATGTGCAGCCTATCCTGACGGAACTCTTCAAGCTCCACATGGAGGCCTCCGACAATGTGCGCTTCCTGTCCACTGTGGAACGTCACTTCAAG
Seq C2 exon
AACATCACACATGGCTCCAGCTTTCACGTGGTCCTGGACACCATTCCCTCCATGATGAGCGCTCTGCGCATGGTGTGGATCATTTCTAGACACTACAACAGAGACGAGAGGATGATCCCACTCATGGAACGCATCGCCTGGGAGATTGCTGAGCGCGTGTGCCGAGTCATCAACCTACGCACCCTGTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'6-17,'6-8,8-17=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(17.4=58.5)
A:
PF083857=DHC_N1=FE(13.2=100)
C2:
PF083857=DHC_N1=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGAGACATGTCAGAGCT
R:
CGTAGGTTGATGACTCGGCAC
Band lengths:
303-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types