DreEX6011148 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27711794-27714163:+
Coord C1 exon
chr5:27711794-27712010
Coord A exon
chr5:27713672-27713829
Coord C2 exon
chr5:27713933-27714163
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTCTGTGTTACAGGTG
3' ss Score
12.3
5' ss Seq
CAGGTTTAT
5' ss Score
4.29
Exon sequences
Seq C1 exon
GTGTATATCCCTCGTCTTTCGGCGAACCAGCAGAGACTCACTAATGGTGGCTATCAGGGTGTTGCTGGCTCTGAAGACAATGACATAAGCAAGACAACAGAAGGTGAAAAGCAGCAGCCTGTAGAGTCCCGTGGGTCTTTTGAAGTCCGGGATGATCTTCTCCACAGCACACATAAATTCCTACAGGTCATAGACCAAACTCTACGGCAGCTGGAAG
Seq A exon
GTGAATTTAAATTGCACATGCCAGAAATAGATTTGGAGGGTGAAGTGGAGTTGTTCTTGTCAAATTCTGTGATGGTGGATAAACTTGAGCAGTGTGTGATGAATTGGCACACACAAATCACAATTGTCATTGAAGAGCAAAAAAGGAAGAAACCACAG
Seq C2 exon
GGACCCGGTCCTTTGGCAGAAATTGAGTTCTGGCGTGAACGTGTTGCTGTCTTTAGTAGTTTGATTGAGCAGCTGAATCTGCAAGCAGTAAAGAAGATTCTAGAAGTGATGACCCGTGCCGATTCATTCATAATGCAGGAACTGGAAAAGACCACAGCCGAGCTTAGAAAATACTACGATGAGTCTGTCAGTAATGTGCAATTCCTCACCACAGTGGAGAGACACTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083857=DHC_N1=PU(5.3=58.5)
C2:
PF083857=DHC_N1=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCCCGTGGGTCTTTTGA
R:
CGGCTGTGGTCTTTTCCAGTT
Band lengths:
255-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]