MmuEX6021101 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124732294-124737033:+
Coord C1 exon
chr5:124732294-124732516
Coord A exon
chr5:124734447-124734604
Coord C2 exon
chr5:124736803-124737033
Length
158 bp
Sequences
Splice sites
3' ss Seq
AACGTGATGCCCTCCACCAGGTG
3' ss Score
7.2
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
GTTTTCATGCCCGCACTGTCCTTCAACCAGCACAAATCGGAGTCAGGCCAGGGGACACTGTCTGGAGAGAACCAGGAGTTTTCTGTTTATGACCTGGCAGAGTCGGTGGTCATCCCGGGGGAGCCGATGGAGTACCACAGCGTCCAACTGATCCGCGATGAGTTCTTAATGAATCTGCAGAAATTTGAGAACAACATTCAAAGGACTATACAGCAGCTTGAAG
Seq A exon
GTGAGATCAAACTGGAGATGCCCAGCATCAGTGTGGAGGGAGACATGTCAGAGCTGGTGTCCAATCCAGAACTGGTGGAGAATTTGGAGCAGTGCGTGATCCACTGGCTGGGCCAGATTTCATATGCGCTGGATTCCCAGATGAAGAAGAAGCCCCAG
Seq C2 exon
GGCAATGGCCCTCTGGCTGAAATCGAATTCTGGAGAGAGAGAAATGCAACGCTGAGCGCCCTCTACGAGCAGACGAAGCTTCCATTTGTTAGGAAGGTCTTAGAGGTGATCAAAGAAGCAGAGTCCATGCTCACGGCCAATGTGCAGCCTATCCTGACGGAACTCTTCAAGCTCCACATGGAGGCCTCCGACAATGTGCGCTTCCTGTCCACTGTGGAACGTCACTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'5-8,'5-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083857=DHC_N1=PU(17.4=58.5)
C2:
PF083857=DHC_N1=FE(13.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACACTGTCTGGAGAGAA
R:
GGAAGCTTCGTCTGCTCGTAG
Band lengths:
256-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types