BtaEX6072196 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54172726-54176952:-
Coord C1 exon
chr17:54176736-54176952
Coord A exon
chr17:54174620-54174777
Coord C2 exon
chr17:54172726-54172956
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTCCATTTTTATTCTGCTAGGTG
3' ss Score
7.88
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTTTTTTGCCAGCCTTGTCCTTCAGTCAGCACAAGGATGCCAACCTGGGACTCACGTCTGGAGAAGTCTTAGACTCTTTTGATTATGACATAGACCTACCTAGCATGCCTGGGGAAGCAATAGAATATCACAGCATTCAGTTAATACGAGATGAATTTTTAATGAACATCCAGAAATTTGCAAGTAGTATTCAAAGAACAATGCAGCAACTTGAAG
Seq A exon
GTGAGATCAAGTTAGAAATGCCAAGCATCAGCGTAGAGGGAGAGGTATCTGATCTGGCAGCTGACCCAGAAACAGTTGAAATTTTGGAGCAATGCGTGATAAACTGGTTGAATCAGATATCTACAGCCCTTGAGGGCCAGATGAAAAAGACACCACAG
Seq C2 exon
GGTAATGGTCCTCTGGCTGAGATTGAATTCTGGCGGGAAAGAAATGCCACCCTAAGTGCTCTGCATGAACAAACAAAGCTTCCAATAGTCAGAAAAGTCTTGGATGTGATGAAGGAGTCAGATTCATTGCTTGTGGCCAACTTGCAGCCCGTCTTAACTGAATTGTTCAAGTTCCACATGGAGGCCTCAGACAACGTGAGGTTTCTTTCCACAGTGGAACGTCATTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.113 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083857=DHC_N1=PU(10.3=58.5)
C2:
PF083857=DHC_N1=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTCAGCACAAGGATGCC
R:
GGCATTTCTTTCCCGCCAGAA
Band lengths:
244-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]