HsaEX6069980 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124265627-124268724:+
Coord C1 exon
chr12:124265627-124265846
Coord A exon
chr12:124267654-124267811
Coord C2 exon
chr12:124268494-124268724
Length
158 bp
Sequences
Splice sites
3' ss Seq
GATCACTTTTATTTTCCTAGGTG
3' ss Score
8.85
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
GTTTTTTTGCCAGCATTGTCCTTCAATCAGCACAGGACGAGTACAACCGTGGGAGTCACATCTGGAGAAGTCTCTAATTCCTCTGAGCATGAATCAGACCTGCCGCCCATGCCTGGGGAGGCAGTAGAATATCACAGTATTCAATTAATACGGGATGAATTTTTAATGAACGTGCAGAAATTTGCAAGTAATATTCAAAGAACCATGCAGCAACTTGAAG
Seq A exon
GTGAGATCAAGTTAGAAATGCCAATCATCAGTGTGGAGGGAGAGGTGTCTGACCTGGCAGCTGACCCGGAAACCGTTGACATCTTGGAGCAGTGTGTGATAAACTGGCTGAATCAGATATCCACAGCGGTTGAGGCCCAACTGAAGAAGACACCTCAG
Seq C2 exon
GGTAAAGGCCCTCTGGCTGAAATTGAATTCTGGAGGGAAAGAAATGCAACCTTAAGTGCGCTGCATGAACAAACAAAGCTTCCAATAGTCAGAAAAGTCTTGGATGTGATCAAGGAATCCGACTCCATGCTTGTGGCTAATCTGCAGCCAGTGTTCACCGAGTTATTCAAGTTCCACACGGAGGCCTCAGACAATGTGCGCTTTCTCTCCACCGTGGAGCGTTATTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.247 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083857=DHC_N1=PU(10.2=58.5)
C2:
PF083857=DHC_N1=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACAACCGTGGGAGTCACA
R:
TCATGCAGCGCACTTAAGGTT
Band lengths:
249-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)