HsaEX6069980 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123781080-123784177:+
Coord C1 exon
chr12:123781080-123781299
Coord A exon
chr12:123783107-123783264
Coord C2 exon
chr12:123783947-123784177
Length
158 bp
Sequences
Splice sites
3' ss Seq
GATCACTTTTATTTTCCTAGGTG
3' ss Score
8.85
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
GTTTTTTTGCCAGCATTGTCCTTCAATCAGCACAGGACGAGTACAACCGTGGGAGTCACATCTGGAGAAGTCTCTAATTCCTCTGAGCATGAATCAGACCTGCCGCCCATGCCTGGGGAGGCAGTAGAATATCACAGTATTCAATTAATACGGGATGAATTTTTAATGAACGTGCAGAAATTTGCAAGTAATATTCAAAGAACCATGCAGCAACTTGAAG
Seq A exon
GTGAGATCAAGTTAGAAATGCCAATCATCAGTGTGGAGGGAGAGGTGTCTGACCTGGCAGCTGACCCGGAAACCGTTGACATCTTGGAGCAGTGTGTGATAAACTGGCTGAATCAGATATCCACAGCGGTTGAGGCCCAACTGAAGAAGACACCTCAG
Seq C2 exon
GGTAAAGGCCCTCTGGCTGAAATTGAATTCTGGAGGGAAAGAAATGCAACCTTAAGTGCGCTGCATGAACAAACAAAGCTTCCAATAGTCAGAAAAGTCTTGGATGTGATCAAGGAATCCGACTCCATGCTTGTGGCTAATCTGCAGCCAGTGTTCACCGAGTTATTCAAGTTCCACACGGAGGCCTCAGACAATGTGCGCTTTCTCTCCACCGTGGAGCGTTATTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'5-9,'5-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083857=DHC_N1=PU(10.2=58.5)
C2:
PF083857=DHC_N1=FE(25.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACAACCGTGGGAGTCACA
R:
TCATGCAGCGCACTTAAGGTT
Band lengths:
249-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains