HsaINT0049269 @ hg19
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124265627-124267811:+
Coord C1 exon
chr12:124265627-124265846
Coord A exon
chr12:124265847-124267653
Coord C2 exon
chr12:124267654-124267811
Length
1807 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GATCACTTTTATTTTCCTAGGTG
3' ss Score
8.85
Exon sequences
Seq C1 exon
GTTTTTTTGCCAGCATTGTCCTTCAATCAGCACAGGACGAGTACAACCGTGGGAGTCACATCTGGAGAAGTCTCTAATTCCTCTGAGCATGAATCAGACCTGCCGCCCATGCCTGGGGAGGCAGTAGAATATCACAGTATTCAATTAATACGGGATGAATTTTTAATGAACGTGCAGAAATTTGCAAGTAATATTCAAAGAACCATGCAGCAACTTGAAG
Seq A exon
GTAAGGTTTCATTTTCCTCCTTTTTAGTTAAGAATGATTAATTTACTGTAGTTGGGATTACAGGTGCATGCCACCATGCCTGGCTAACTTTTGGAACATTTTTGTTTGTTTGTTTTGTGGAGACGGGGTCTCACTTTGTCGCTCAGGCTGGCAAAAATCATTTTAGCACAGGATTTTTTGTTTTGAGACAGAGCCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGTGAGATCTCGGTTCACTGCAACCTCCGCCCCCTGGGTTCAAGGGATTCTCCTGCCTCAGCCCCCCGAGTAGCTGGGACTACAGGTGTGCACCACCACACCTAGCTAATTTTTGTATTTTTAATAGAGACGGGGTTTTACCATGTTGGCCAGGCTGGTCTTAAACTCCTGACTTCAAGTGATCCACCTACCTTGGCCTCTCAGAGTGCTGGGGTTACAGGTGTGAGCCACTGTGCCCAGCCTAGCACAGGATTTTTGAATACATTTTTCTTCATTGTTTTCTAGTAGTCAACATCCAGTGATGAGAAACTGAATGTTCTTCTAATTTTTCTCCCCTCCCCCTTTACGTAAGCTTTTAAGAGCATCTGGTTATCCCTAGTGTTTTGGTGTTAGGATGATGGGCCTTTGTGTGGAATTTTTTCCATTGATTTTTTAAACACTCAGTGGGTGTTTTCAGTCCAAAGACTGAAAAATCATCTTGACGTTTTCCTCCACTATTTGTTTTCTCTTGCTGAAATTCCTGCTGGATGGATGTCTAGAGATTCTATTTCTTATCTTTTCTCTTGTATTTTTCATCTTTTTGTCTTTGTATTCTTTCCTGGAGTGTTCTTCAACTTCTATGTTACCAACGTTTGATTGATAGTCATATCAGCTATTATATTTTTAATTTTTAAGACCTCTGATTCTCTGATTGTATCTTTTTTCATAGCATCCTGTTCTTGTTTGATGGATGCTATATGTCTCAAATCTCTGAGACAAATAGTTGGGCTTTCCTTTTGGAAATGTTCTCCTTTTGCCCTGCCCTGCCTCCCCTCCCCTCCCCTCCCCTCCCCTTCTCTCCCCTCCCCTTCCCTTTTCTTTCTTTTCTTTCCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTGACAAGGTCTCACTCTGCCGCCCAGGCTGGAGTGCAGTGGCACAAACATAGCTCACTGCAGTCTCAACCTTCTGGGAGCTCAGGCAATCCTCCCACCTCAGTCTCCCAAGTAGCTGGGATTATAGGCACACACCACCATGCCTAGCTAATTTTTGTATTTTTAGCAGAGAGGGAGTTTTGCCACATTGGCCAGGCTGGTCTCGAACTCCTGACTGCAAGTGATCTTCCTGCCTTGGTCTCTCAAAGTGTTGAGATTACAGGTGTGAGCCATCGTGCCTGGCCTGTTCTCCTTTTCTTTACATTATTTCAATTTCCCCTGATGTCATTTTTCCCCTGATTTATCTTTGACTGACTGTTTCAGGCTGGTGGTTATCTAAAATGTCTGCTGGCTCTTTGTTCAAGTTTTTAAAAATTGAAGTCACTAGGTTATAAACTCAGGAACATCTTAAATAACTAAATCATTTTGATCAAGCTTAACACCGGAACAATTATCTAAAATGTTTGAATTACATTCTAATGAAAGAGAATGAGATACAGATATTATCAGGACAGGGGATGCGTCAGACCTTATTATACTGATGAAGCTTGAGAGACGACCCAGCCGGTGAACTTGAATGTTTCTCTTTGTAATCATTTTTCCTGAACGAATGACTGACTGATCACTTTTATTTTCCTAG
Seq C2 exon
GTGAGATCAAGTTAGAAATGCCAATCATCAGTGTGGAGGGAGAGGTGTCTGACCTGGCAGCTGACCCGGAAACCGTTGACATCTTGGAGCAGTGTGTGATAAACTGGCTGAATCAGATATCCACAGCGGTTGAGGCCCAACTGAAGAAGACACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-DNAH10:NM_207437:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.247 A=NA C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(10.2=58.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACAGGACGAGTACAACC
R:
GGTGTCTTCTTCAGTTGGGCC
Band lengths:
347-2154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)