MmuINT0050624 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125212664-125214974:+
Coord C1 exon
chr5:125212664-125212886
Coord A exon
chr5:125212887-125214816
Coord C2 exon
chr5:125214817-125214974
Length
1930 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
AACGTGATGCCCTCCACCAGGTG
3' ss Score
7.2
Exon sequences
Seq C1 exon
GTTTTCATGCCCGCACTGTCCTTCAACCAGCACAAATCGGAGTCAGGCCAGGGGACACTGTCTGGAGAGAACCAGGAGTTTTCTGTTTATGACCTGGCAGAGTCGGTGGTCATCCCGGGGGAGCCGATGGAGTACCACAGCGTCCAACTGATCCGCGATGAGTTCTTAATGAATCTGCAGAAATTTGAGAACAACATTCAAAGGACTATACAGCAGCTTGAAG
Seq A exon
GTCTGTTCTGCCCGCCCCGCCCCTCCCCCAAGCCGTGCTCAAAGAACTAATAACTCACCCTAAGAAGACAATGCCAAAATTCAGAACCCTTATTGATTTTGTTCCACTTTGTGATTTTTGTTTGGTGTTTGTTTGTTTGTTTGTTTGTCTGTTTGTTTCTGAGACAGGGTCTCTTTGTGTAGCCCTGGCTGTCTTGCTGTCTTAGAGCTCGATCTGTAGGCCAGGCTGGCTTTGAACTTCTAGTTCTACCTCCCTATGCCTCCCAAGTGCTGGGATGAAAGGCATGTGCTACCAATTCCTAACAGTTTATGATCTTTTTAACGTATCATTTTAAATGTGTTTGGGGGTTTGCATGTATGTATGCATTCAGTACCTGCAGCAGCTAGAAGAGGGTGCTGGATCTCCTGGAACTGAACCGGAGTGACAGGCTGTTGTGAATCACATGGGTGCTGGGAGTCTAACCACGGTCCTCTGGAAAAGCACCCAGTGCTCTAAACCACTGAGCCATTTCATATCTCTAGACAACCCCCACCCCACCCCACCCCCCTTTTTTTTTGAGACTGGGTGTCTTGTAGCCCAGATCTGTGTCAAAGAGCGGAGGGTGACTTTCAATTTCTGATCCTCCTGCCTCTACTTCCCAAGGGCTAAGGTCACACCCGTGTGCTCCCATGCTCTGTGCTCTGTTTATCCAATGCTGGGGGTTGAACCCCGTGCCACGCCCTACCTGCTGGACCACATCTCAAGCCCCGAGAATTCTTGTTTATATGCTCACTGGAAATGGAATTGTTTTTTTGTTTGTTTGGGTTTTTTTTGTTTCTGTTTTTTGTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCGAGTGCTGGGATTAAAGGCGTGCACCACCAAGCCCGGCCAGGGAATTGTTTAGAAGCAAAGCAATGAAGTCCCTGTGGTGACAAGAACCACATCTTTTCTTACCTCTTCGTGGGTGAGGGTGGAGGTGCACCTGTGTGTGCAGGTCCTGGTAAGGTGTTGCTCCCTAGGTGACATTCTCTGTCTTTTTTGGAGATGAGGTCTCTCGCTTTCCAACTGGGTTAGGCTGGCTGGTCATCGAACCCCAGGGAATCCACTTGTCTCCACTTTGGGGTGACAGACATGAACCACTGCTCTTGGCTTGCATAGGAGTTGTGGGGATTTGAACTCATATCCTTATGCTTGTGCAGCAAGCACTTTAGCCATGGAGGCATCCCCCTAGTTTCTGTGTTTTATGTGCCTGAAGAGCACTGCAGCTGGACCTTTCCTTGCTCGTTGCTCTGTTTAGTTCTGAGATGTTTTAACTCCATTTATTTCCCCAGGGCCTTCTGCTCTTGTCGAATGGACATATTCACTCCAGCCTCTGGCACAAAGAATCAGGACTTAAATATTTTTTTCCTTTACATTATCTTGATTTGGATAACCCGACTTATCTTCATTTACACCAGTTATTTTCCCCCTCTCCAAAGATGTATTTTACTTTGTGTATTTGTGTGGTGGCAGCGGCAGGAGAGTGCGCGTGAGAGCAGGTACCAGTGGAGGCCAGAAGAGGGCGTCAGATACTCTAGAGCTGAGTTACAGTGCTGATACCTCTGGTTCTCTGGAAGAACAGAGAGTGGCCCTAACCACTGGGCAACCTCCCCAGTCTCTGAGGATCTCTTAAATAGCGCTGAAGTCCGGTCTCAGACCATCATCCGATCACATGCCTGTGAAAGAACTCGAGCCAGAGATGGCCGAGGAGACAGGCTAACGACCCGATGATGCGGGAGGGTAGAGCTGGCTGATGAACGGGAACGTTACAGGTTTTTCCTAAGCTAGGCTCTAACGTGATGCCCTCCACCAG
Seq C2 exon
GTGAGATCAAACTGGAGATGCCCAGCATCAGTGTGGAGGGAGACATGTCAGAGCTGGTGTCCAATCCAGAACTGGTGGAGAATTTGGAGCAGTGCGTGATCCACTGGCTGGGCCAGATTTCATATGCGCTGGATTCCCAGATGAAGAAGAAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(10.2=58.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAATCGGAGTCAGGCCAG
R:
GGGGCTTCTTCTTCATCTGGG
Band lengths:
349-2279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: