BtaINT0050212 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54065352-54065917:-
Coord C1 exon
chr17:54065696-54065917
Coord A exon
chr17:54065500-54065695
Coord C2 exon
chr17:54065352-54065499
Length
196 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCTGTCGCTGTCCCTTCCAGGTG
3' ss Score
12.57
Exon sequences
Seq C1 exon
GTGGCTGAACGATTTGGATGAGCTGATGCACCGGCGGGTGAAGTTGCTGGGCGACTGCCTGCTGTGCGCAGCCTTCCTGAGCTATGAGGGCGCCTTCACGTGGGAATTCCGGGATGAGATGGTCAACCAGGTATGGCAGAACGACATCCTGGAGCGGGGGATACCCCTGAGCCAGCCCTTCCGACTGGAGAACCTGCTCACAGACGACGTGGAGATCAGCAG
Seq A exon
GTGAGGGCGACCCCGAGCTGGGAGGACCAGGGGAGCCTCGGGGCAGCGTGCAGAGCTGGCGGTGTGCCTGCCTGACCCACCTTCACAGAGACTGCAGGGAGCAGCTGACCGCCCAGCTTCCCCGATTTGGATGCTCCCGGTCAGTTCACAACTCAGCCAGAAAAGTCCCCATTTCCCCTGTCGCTGTCCCTTCCAG
Seq C2 exon
GTGGGGCTCCCAGGGGCTGCCCCCTGACGAGCTCTCGGTTCAGAACGGCATCCTCACCACCCGGGCCAGCCGCTTCCCCCTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATAAAGAGAAAAGAGGAGAAGAACAACCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:61
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(14.5=65.3),PF127812=AAA_9=PU(3.9=12.0)
A:
NA
C2:
PF127812=AAA_9=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACGTGGGAATTCCGGGAT
R:
TTATCCAGTTGAGGGCCTGCT
Band lengths:
247-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development