DreINT0009143 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27761646-27762094:+
Coord C1 exon
chr5:27761646-27761867
Coord A exon
chr5:27761868-27761946
Coord C2 exon
chr5:27761947-27762094
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AGGAACAAAAATTCTCGTAGATG
3' ss Score
0.89
Exon sequences
Seq C1 exon
CTGGATAAAGGACCTGGAGGAGCTGAAGCAGCGGCGAGTGCGTCTTCTGGGAGACTGTCTAATCTGCGCTGCCTTCCTCAGCTATGAAGGAGCCTTCAGCTGGGACTTCCGTAACGAAATGGTGTATAAGGTATGGCAGGCAGACGTCCTGGAAAGAGGCATTCCTCTGAGCCAGCCTTTCCGAATAGAAAACCTGCTCACTGATGAGGTGGAGATCAGCAG
Seq A exon
GTGAGACATCAACCCATCTGTGGAACATTTAATGTTACTGTATATAACTGCATTTACGGAGGAACAAAAATTCTCGTAG
Seq C2 exon
ATGGGGATCTGAAGGTCTCCCTCCAGATGAGCTCTCAGTGCAGAACGGCATCCTGACTACCAGATCTAGCCGCTTCCCCTTGTGCATTGACCCCCAGCAGCAAGCGCTTAACTGGGTCAAAAAAAAGGAGGAGAAGAACAATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(14.5=65.3),PF127812=AAA_9=PU(3.9=12.0)
A:
NA
C2:
PF127812=AAA_9=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGTATGGCAGGCAGACGT
R:
GGGAAGCGGCTAGATCTGGTA
Band lengths:
174-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]