BtaINT0050214 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54059329-54061018:-
Coord C1 exon
chr17:54060739-54061018
Coord A exon
chr17:54059559-54060738
Coord C2 exon
chr17:54059329-54059558
Length
1180 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
CTCCCTCTGTCCCCCCACAGTCA
3' ss Score
11.72
Exon sequences
Seq C1 exon
GTGGCATCCTTTAATGACCCCGACTTCCTCAAGCAGCTGGAAATGTCCATAAAGTATGGGACCCCCTTCCTGTTCCACGATGTGGATGAGTACATCGACCCTGTGATTGACAATGTCTTAGAAAAAAACATCAAGGTCTCCCAAGGACGGCAGTTTATCATTCTGGGAGACAAGGAAGTGGACTATGATTCGAATTTCAGACTGTATCTGAACACCAAGCTGGCCAACCCCAGATACAGCCCTTCCGTGTTTGGGAAAGCCATGGTGATCAATTATACTG
Seq A exon
GTAAGGATGTACGGAAGGTCAGTGTCAAATTTAGGTGGAGACACATTCGGAGCTGGAGGCTCTCATGGGACTTCATTTCATTGTGACTCATTCTCCGAGTCACACCTTTCATAGTCAGTCCATCATTACTTGGGCTTCCCCAGAGGCTCAGCAGGTAAAGAACCTGCCTGCAATGCAGGAGACCTGGGTTCAATTCCTGGGCTGAGAAGATCCCTTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGGAAATCCCCTGGACAGAGGAGCCTGGTGGGCTACAGTCCATGGAGTTGCAAAGAGTTGGACATGACTGAGCAACTGAGCATACACGCCTAGAAGTTCTTAATGAGGAAGGAACATCTAGAAGGTTCTGGGGCCCTGTAGAAGGCAATGAGTTATGTGTCTTGAGACATGATAAGTCTGGACCACAGGACTCAGACATTCACACTCGGAGCCAGGTGAGACCCCTCTCTGCTGGGGCAGAAAGCTACTCTCTGTTTGTGTATTTAAATATATGGCTTGGTTTTAGGTTTTCTTCTTCCTCTCAGTTGAATTCTGTTAGGAATCAAACGTCATCTTCCACATTTTCTAGATGGTCACACAGGTTCCTAGATGGGTTAATAAAGTTTACGTAGGCTTTAGGGGATTCCCTGGCAGCCCAGTGGTTAGGACTGGGAGCTTTCACTGCCAAGGGCTTGGGTTCGATCCCTGATTGGGGAACTGAGTACCCGCAAGCCATAAGGTATGGCCAAAAAGAATTGGGTTATGCTTTCAGCAAGGGCCCCCCCAAGTGTAGGAGCCCCGAATTTGATCTTAATGCATCATCTCTCTTGCTGTTCACCTCTCCACGTAACAGCATCTCTGTTTCAATCTGTCCAATATTTTTCACCTGGGGCTTTATAATGTTTTTTAATTAAATTATTTTTTAATTGAAGGATAATTGTGTTGGTTTCTATCAAACATCAACATGAATCAGCCATAGGTGTACATATGTCCTTCCCTCTTGAACCTCCCTGAAGAATGGTTTTGATAGAAGAGTGAGTCCTCATGTTCCTGAGATGCTGGGCCCACCCTCCTGTCATCCCAGGCGCCACTGTGTAGGGGAGAACACACAGGGACCAGCTTGTTGGGGGGACGGCAGTAAAGGGCCTCCCTCTGTCCCCCCACAG
Seq C2 exon
TCACGCTGAAAGGCCTGGAGGACCAGCTGCTAAGTGTGCTGGTGGCCTACGAGAGGCGCGAGCTGGAGGAGCAGAGGGAGCACCTTATCCAGGAGACGAGTGAGAACAAGAACTTGCTGAAGGACCTGGAGGACTCCCTCCTCCGGGAGCTGGCCACCTCCACGGGGAACATGCTGGACAACGTGGAGTTGGTGCAGACCCTGGAGGAGACCAAGTCCAAAGCTACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.052
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(40.3=100)
A:
NA
C2:
PF127812=AAA_9=FE(32.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCTGTTCCACGATGTG
R:
TCCTCCAGGTCCTTCAGCAAG
Band lengths:
350-1530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development