GgaINT0008970 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4912285-4913090:-
Coord C1 exon
chr15:4912811-4913090
Coord A exon
chr15:4912515-4912810
Coord C2 exon
chr15:4912285-4912514
Length
296 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GTGTTGTGTTTTATCTGTAGTTA
3' ss Score
8.26
Exon sequences
Seq C1 exon
GTGTCTTCCTTTAATGACCCAGATTTCCTTAAACAACTGGAACTTGCCATAAAGTATGGAAGTCCCTTCTTGCTGCATGGTGTTGATGAATACATTGATCCTGTGATAGACAATGTCTTAGAGAAGAATATCAAAGTTGCACAAGGGCGAAAATTCATTGTCCTGGGTGACAAAGAGGTTGACTATGACAGTAACTTTAGATTGTACCTGAACACCAAATTAGCAAACCCAAAGTATTCTCCCGCTGTATTTGGGAAAGCTATGGTTATCAATTATACAG
Seq A exon
GTAAGCAGTGGGTGTTTATTAACAAAGTAGTCATTATGCTGCTTAGGGCCTGCGTGGTTATCTGAAACAACAAAACTTTAACATTTAATAGTCTCCCTAATACTTATCATCTGATTTAATATAAAATTCTTCTCACTTCTCTCTCTTCATCTGAAACACAAATGAAGATCTAGACTTACACCTGTCAGGTTAGGATGCACTGGTACAATTAATATACAGCTATTATCCAAGCCACTCTGTTGTCTAAAAGCTGTCCTTGTTCTTTTAAAAAAGGCTGTGTTGTGTTTTATCTGTAG
Seq C2 exon
TTACGCTGAGGGGCCTGGAGGATCAATTGCTCAGTGTTATTACGGGTTTTGAAAGAAGGGAATTGGAAGAACAGAGAGAACATCTCATTCAGGAGACAAGTGACAATAAAAACTTGCTGAAAGATCTGGAAGACTCTCTCCTTCGGGAACTGACATCTTCCACAGGAAACATGTTGGACAACATAGACTTGGTGCAAACCATGGAGGAGACAAAATCCAAAGCTACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(39.9=100)
A:
NA
C2:
PF127812=AAA_9=FE(32.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTGGGTGACAAAGAGGT
R:
TGTCCAACATGTTTCCTGTGGA
Band lengths:
302-598
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]