MmuINT0050628 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125299501-125300429:+
Coord C1 exon
chr5:125299501-125299780
Coord A exon
chr5:125299781-125300199
Coord C2 exon
chr5:125300200-125300429
Length
419 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
AAGGTTCTCTGTCCTTTCAGTCA
3' ss Score
7.85
Exon sequences
Seq C1 exon
GTTGCTTCCTTCAATGACCCCGACTTCCTGAAGCAGCTCGAGATGTCCATAAAGTATGGGACCCCCTTCCTGTTCCACGACGTGGATGAGTACATCGACCCTGTGATTGACAGCGTCCTGGAGAAGAACATCAAGACCTCCCAAGGCCGCCAGTTCATCATTCTGGGGGACAAGGAGGTTGACTATGACTCGAATTTCCGGCTGTACCTCAATACCAAGCTGGCCAATCCTAGATACTCCCCATCGGTGTTTGGGAAGGCCATGGTCATCAACTATACTG
Seq A exon
GTAAGAAGGGGCAGATCTGGCTGCAAACATCCAGGAGTCTACCTTGAAAGCGAGGCTTCACGGGCATCTTGATCCCTGGTGGCTCCAGTCTCTCCATGGAAGCTGGGCTTTTTTGTTTTGTTTTGTTTTGGTTTTGGTTTTGGTTTTGGTTTTTTCAAGACAGGGTTTCTCTGTCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTACACCACCATTGCCCAGCCTGTGGAAGCTGTTTTTGCTGTTTGGTCCTTAATGTGTAGGGATTGGGGGACTTTGAAATGCAGAGAGCTGCAGGTGTCTCTGGGTATGCCTAGTCTGGACTCCAGGGCAAGCAAGTGAAGGTTCTCTGTCCTTTCAG
Seq C2 exon
TCACTCTGAAGGGCCTAGAGGACCAGCTGCTGAGTGTGCTGGTGGCCTATGAGAGGCGCGAGCTGGAGGAGCAGAGGGAGCACCTCATCCAAGAGACCAGCGAGAACAAGAACCTGCTCAAGGACCTGGAGGACTCACTCCTGCGCGAGCTGGCCACGTCCACGGGCAACATGCTGGACAATGTGGAGCTGGTGCAGACCCTGGAAGAGACCAAGTCCAAAGCCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:63
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.052
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(40.3=100)
A:
NA
C2:
PF127812=AAA_9=FE(32.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTTCATCATTCTGGGGG
R:
TGGACTTGGTCTCTTCCAGGG
Band lengths:
351-770
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: