DreINT0009145 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27762185-27762908:+
Coord C1 exon
chr5:27762185-27762464
Coord A exon
chr5:27762465-27762678
Coord C2 exon
chr5:27762679-27762908
Length
214 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
TTTAATTTTTTTGTTTTTAGTTA
3' ss Score
8.49
Exon sequences
Seq C1 exon
ATCTCATCATTCAATGATCCAGACTTCTTGAAGGGGTTGGAGTTGGCTATTAAGTATGGATTCCCCTTCCTCTTCCAAGATGTGGATGAATATATCGATCCCGTAATTGACAACGTTCTTGAGAAGAATATAAAAGGGGCAGAGGGGCGCCAGGTTGTCGTACTTGGTGATAAGGAAGTTGACTACGATCCCAACTTCAAACTTTACCTCAATACCAAACTTGCAAACCCAAAGTTCTTACCTGCAGTATTTGGGAAGGCTATGGTTATCAATTACACCG
Seq A exon
GTGAGAGCAAACACTATGCAGTATACACCAGTTGATGCTTATTAACAGCAAGTATTGATGTAAGAACTGTACAACAATCGGAATTTATCACACTAAATTTAAAAACTGTTATTTGTTTTTAAATAACACACTTCGATTTTTTTCTGACTTTAGTGTTAATATGCATTTAATTTGGGATTTTACAGATTTTTTTGTTTAATTTTTTTGTTTTTAG
Seq C2 exon
TTACCCTGAAGGGATTGGAAGATCAGCTGCTGAGTGTTATTGTAGGATTTGAGCGAAAGGAGCTGGAGGAGCAAAGAGAAAGGCTTATTCTAGAGACTAGTGAGAACAAACGCTTGCTGAAAGATCTGGAGGACTCACTGCTGAGAGAGCTGGCCACCTCTACTGGAAACATGCTGGATAATGTTGAGCTCATACAGACTCTGGATGAAACCAAGTCCAAAGCCAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(40.3=100)
A:
NA
C2:
PF127812=AAA_9=FE(32.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGTTGTCGTACTTGGTG
R:
TGTTTCCAGTAGAGGTGGCCA
Band lengths:
303-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]