BtaINT0050220 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54050240-54051419:-
Coord C1 exon
chr17:54051236-54051419
Coord A exon
chr17:54050441-54051235
Coord C2 exon
chr17:54050240-54050440
Length
795 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
3' ss Seq
TTCTGTCTCCGTCAGAGCAGGTG
3' ss Score
1.38
Exon sequences
Seq C1 exon
GTACGTGCAGCCCCCGATGATCAGCTTTGAAGCCATCTTTGAGCAGAGCACACCCAACTCGCCCATCGTGTTCATCCTGAGCCCTGGCTCGGACCCTGCCAGTGACCTTATGAAACTAGCCGAACGCAGTGGTTTTGGAGGGAACCGCCTCAAATTCCTTGCCATGGGTCAAGGTCAAGAAAAG
Seq A exon
GTAGATTGTTGTTGGAAGCAACAAGCCCTAAACGTGCTTGAGGTGCCTGGAATGAATTCGCGAATGCCTGGCTTTAAGCCAAGAGTGCCACCCACACACCAGCACCACGCCTTTCCGGTCTAAGGAGCAGGAATCAAATGTCACAGCGATGATGACAATGTGAACAGTAGTTAGTTCTAGAGCTGACCTTCAGAGATCACCTGGGCTTGCGCTGTATGTTGGAAACAGTATGTTCTGCTATTTCCAAAGCACTTTCTTTTAAAAAATAATTAATTAATTAGGCTGTGCTGGGTCTTAGTTGCAGCATGCAGGATCTTTGGTTGTGGTATGTGGGATCTAGTTCCCTGACCAGGGCTCAGATCTGGGCCTCCTATATTGGGAGCTTGGAGTCTTAGCCACTGGACCACCAGGAAGTCCCTCCAAATCTGGTCATCATCGCATCTGGTGATCATCTCCCTCAGCCCTTGCAGCAGCCCTATTTTGGATCATGCTGTCACTGGTGGCTGCCGGTGGCCAGGCCACCCTGTCAAGGGGCAGGTGCCACTGTGTCTGAGGTTGGAGCTCTGGGTGCCGAGGGAGGCCAGTGAGTGCAGCCCAGTGAACCCGGGTGACCCTGGAGGAATGCTCAAGGGTTGTATCTTCAGAGGCTCCCTCTGCAGCTCTGGGACCACCGGCTCCTTTGTATCTTCTGCTGCAGTGGCCAGCAGGTTATGGGGGCTTGGGGAGTGTCTGGGAGAGCACGGGGTGGTGCAGCCTTGGGACACCAACACTTCCCTTCTGTCTCCGTCAGAGCAG
Seq C2 exon
GTGGCCCTGCAGCTGCTGGAGACGGCGGTGGCTCGTGGGCAGTGGCTGATGCTGCAGAACTGCCATCTCTTGGTCAAGTGGCTGAAGGATCTGGAGAAGTCCCTGGAGAGGATCACCAAGCCCCACCCTGATTTCCGCTTGTGGCTCACCACAGACCCCACCAAGGGCTTCCCCATTGGGATCCTGCAGAAGTCCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:69
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.6=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(9.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATCTTTGAGCAGAGCAC
R:
AGGACTTCTGCAGGATCCCAA
Band lengths:
350-1145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development