DreINT0009152 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27770044-27770650:+
Coord C1 exon
chr5:27770044-27770227
Coord A exon
chr5:27770228-27770449
Coord C2 exon
chr5:27770450-27770650
Length
222 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
ATGTTTCATTTATTTTGTAGGTT
3' ss Score
9.95
Exon sequences
Seq C1 exon
ATACGTGCAGCCTCCTGTGATAAGCTTTGAAGCTATTTTTGACCAAAGCTCTCCAAACTCACCCATCGTGTTTATTCTGAGTCCAGGCTCAGAACCAGCCAGCGATCTGATGAAGTTGGCCAAACACTCAGGCTTTGGCGTCAACAGACTCAAATTTCTTGCCATGGGGCAGGGACAGGAAAAG
Seq A exon
GTACACACACACACACACACACACACACACACACACACACACACACACAGACACACACACACACAAACAGAAAAACACACATGTGCAAGTCTATATGCTGCATTTATGATATTTGACACCAGTGTAGTGCACTGCAGTGGAGTATTATGTATTAACCAATAATAGTGTGATTGTGAAGTACACCCTTGAGCTTGTGCTACAAATGTTTCATTTATTTTGTAG
Seq C2 exon
GTTGCATTTCAGCTGTTGGATACAGCTGTAGCAAGAGGTCAATGGTTGATGCTACAAAACTGTCACCTGTTAGTGAAATGGCTTAGGGATCTAGAGAAAACGCTGGAAAGAATCACTAAGCCACATCCAGACTTCCGCCTCTGGCTCACCACAGAGCCCATTAAAGACTTTCCCATCGGCATCCTGCAGAAATCCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.6=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(9.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTCCAGGCTCAGAACCAG
R:
CAGGATGCCGATGGGAAAGTC
Band lengths:
293-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]